Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ABU640_RS01360 | Genome accession | NZ_CP161854 |
| Coordinates | 296673..297257 (+) | Length | 194 a.a. |
| NCBI ID | WP_161418895.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain C3616 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 291673..302257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU640_RS01345 (ABU640_01345) | oxyR | 292079..292972 (+) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
| ABU640_RS01350 (ABU640_01350) | - | 293047..295524 (-) | 2478 | WP_032481152.1 | penicillin-binding protein 1A | - |
| ABU640_RS01355 (ABU640_01355) | pilM | 295667..296683 (+) | 1017 | WP_032481153.1 | type IV pilus assembly protein PilM | Machinery gene |
| ABU640_RS01360 (ABU640_01360) | pilN | 296673..297257 (+) | 585 | WP_161418895.1 | PilN domain-containing protein | Machinery gene |
| ABU640_RS01365 (ABU640_01365) | pilO | 297250..297840 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ABU640_RS01370 (ABU640_01370) | pilP | 297830..298348 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| ABU640_RS01375 (ABU640_01375) | pilQ | 298374..300089 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| ABU640_RS01380 (ABU640_01380) | aroK | 300276..300800 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ABU640_RS01385 (ABU640_01385) | aroB | 300828..301913 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21954.38 Da Isoelectric Point: 9.9503
>NTDB_id=1022753 ABU640_RS01360 WP_161418895.1 296673..297257(+) (pilN) [Vibrio cholerae strain C3616]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTSASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTSASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1022753 ABU640_RS01360 WP_161418895.1 296673..297257(+) (pilN) [Vibrio cholerae strain C3616]
ATGTTGCATAAGGTCAACTTACTGCCATGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTAGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGTGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATTCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACTTCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCATGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTAGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGTGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACCACTGAGTTTATGAACCAAATGCC
AAACCTGATTCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACTTCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
99.485 |
100 |
0.995 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |