Detailed information NTG1022685

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: LF924_RS03565
• Genome accession: NZ_CP161827
• Coordinates: 815071..815625 (-)
• Length: 184 a.a.
• NCBI ID: WP_226051837.1
• Uniprot ID: -
• Organism: Dickeya chrysanthemi strain A604-S21-A17
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	798299..815625	815071..815625	within	0

Gene organization within MGE regions

Location: 798299..815625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LF924_RS03495 (LF924_003495)	-	798299..802393 (-)	4095	WP_226051854.1	baseplate J/gp47 family protein	-
LF924_RS03500 (LF924_003500)	-	802476..802895 (-)	420	WP_012768436.1	GPW/gp25 family protein	-
LF924_RS03505 (LF924_003505)	-	802898..803197 (-)	300	WP_226051852.1	PAAR domain-containing protein	-
LF924_RS03510 (LF924_003510)	vgrG	803268..805058 (-)	1791	WP_226051850.1	type VI secretion system tip protein VgrG	-
LF924_RS03515 (LF924_003515)	-	805071..805718 (-)	648	WP_226051848.1	phage tail protein	-
LF924_RS03520 (LF924_003520)	-	805734..805919 (-)	186	WP_039999690.1	hypothetical protein	-
LF924_RS03525 (LF924_003525)	-	805947..806405 (-)	459	WP_071604662.1	phage tail protein	-
LF924_RS03530 (LF924_003530)	-	806500..806970 (-)	471	WP_012768442.1	phage tail protein	-
LF924_RS03535 (LF924_003535)	-	807115..808668 (-)	1554	WP_226051846.1	phage tail sheath C-terminal domain-containing protein	-
LF924_RS03540 (LF924_003540)	-	808780..809592 (-)	813	WP_226051844.1	hypothetical protein	-
LF924_RS03545 (LF924_003545)	-	809598..810170 (-)	573	WP_226051842.1	DUF4255 domain-containing protein	-
LF924_RS03550 (LF924_003550)	-	810619..811248 (+)	630	WP_226051840.1	NAD-dependent dehydratase	-
LF924_RS03555 (LF924_003555)	-	811283..811861 (+)	579	WP_226051839.1	flavin reductase family protein	-
LF924_RS03560 (LF924_003560)	-	812576..814456 (-)	1881	WP_318841856.1	reverse transcriptase domain-containing protein	-
LF924_RS03565 (LF924_003565)	ssb	815071..815625 (-)	555	WP_226051837.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 184 a.a.
• Molecular weight: 19592.59 Da
• Isoelectric Point: 5.2440

>NTDB_id=1022685 LF924_RS03565 WP_226051837.1 815071..815625(-) (ssb) [Dickeya chrysanthemi strain A604-S21-A17]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRAGGGAGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQ
SRPQQSAPMPSNEPPMDFDDDIPF

Nucleotide

• Length: 555 bp

>NTDB_id=1022685 LF924_RS03565 WP_226051837.1 815071..815625(-) (ssb) [Dickeya chrysanthemi strain A604-S21-A17]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCGGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAACAGACCGGCGAGCAGAAAGAGCGCACCG
AGTGGCACCGTGTCGCACTGTACGGCAAGCTGGCTGAGATCGCCGGCGAATACCTGCGCAAAGGCTCCCAGGTGTATATC
GAAGGCCAATTGCGTACCCGCAAATGGCAGGATCAGGGCGGTCAGGACCGCTACACCACTGAAGTCGTGGTTGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGCGCTGGCGGCGGCGCTGGCGCTCCGGCCGGTGGCAACATGGGCGGCAATACGG
GTGGTGGTAACGCGCCACAAGGTGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGCGGCGGTCAG
TCCCGTCCGCAGCAAAGCGCGCCGATGCCGAGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.797	100	0.75
ssb	Glaesserella parasuis strain SC1401	54.737	100	0.565
ssb	Neisseria meningitidis MC58	44.503	100	0.462
ssb	Neisseria gonorrhoeae MS11	45.161	100	0.457