Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   AB1395_RS07670 Genome accession   NZ_CP161815
Coordinates   1507246..1508547 (-) Length   433 a.a.
NCBI ID   WP_218653583.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502246..1513547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS07660 (AB1395_07660) raiA 1505958..1506506 (-) 549 WP_115130705.1 ribosome-associated translation inhibitor RaiA -
  AB1395_RS07665 (AB1395_07665) - 1506587..1507249 (-) 663 WP_115130706.1 ComF family protein -
  AB1395_RS07670 (AB1395_07670) comFA/cflA 1507246..1508547 (-) 1302 WP_218653583.1 DEAD/DEAH box helicase Machinery gene
  AB1395_RS07675 (AB1395_07675) - 1508594..1509223 (+) 630 WP_115130708.1 YigZ family protein -
  AB1395_RS07680 (AB1395_07680) cysK 1509321..1510250 (+) 930 WP_218653584.1 cysteine synthase A -
  AB1395_RS07685 (AB1395_07685) tnpA 1510402..1510915 (-) 514 Protein_1454 IS200/IS605 family transposase -
  AB1395_RS07690 (AB1395_07690) - 1511110..1511469 (-) 360 WP_104968357.1 S1 RNA-binding domain-containing protein -
  AB1395_RS07695 (AB1395_07695) - 1511469..1512869 (-) 1401 WP_218653585.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49273.08 Da        Isoelectric Point: 9.4254

>NTDB_id=1022602 AB1395_RS07670 WP_218653583.1 1507246..1508547(-) (comFA/cflA) [Streptococcus pluranimalium strain SS-15]
MKTLKEKSGCWFAGSSITAEEREEAIKIPAFTQENGNLTCNRCSEKITTDWQLPDGTRYCRSCILLGRLTEDDHLYYFPP
KTFPKRNALQWKGKLTSYQKEISGSLVQSLEDRKDSLVHAVTGAGKTEMIYEVVARVIDEGGQVCLASPRIDVCIELYKR
LSKDFSCDIDLLHGDSEPYSCSPLIIATTHQLLKFYHSFDLILVDEVDAFPYVDNKILYHAVRTAKKADGLTIYMTATST
EELDKQVKKGILKKRTLSRRFHGNPLIEPRNIWLTGLEKKVDSGKIPLKLKRYLDRQFQTGYPLLIFVPDIAFGKKIKKV
LCQQYPKVSIGFVSSNSPDRLEEVEMFRHGDLRVLISTTILERGVTFPKVDVFVLLAHHKLFTSSSLIQIGGRVGRSLER
PTGDLFFFHEGVTRAIKKTKKEIRQMNHLGGFK

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=1022602 AB1395_RS07670 WP_218653583.1 1507246..1508547(-) (comFA/cflA) [Streptococcus pluranimalium strain SS-15]
ATGAAAACGCTAAAAGAAAAAAGTGGTTGCTGGTTTGCAGGTTCTAGTATCACGGCAGAGGAAAGAGAAGAAGCCATAAA
GATACCTGCTTTCACTCAAGAAAATGGGAATCTTACTTGTAATAGATGTTCAGAAAAGATTACAACTGACTGGCAGTTGC
CGGATGGGACACGTTATTGTCGCTCCTGTATTTTATTAGGTAGATTGACGGAAGATGACCATCTCTATTATTTTCCACCG
AAAACTTTCCCAAAAAGAAATGCTTTACAATGGAAAGGCAAATTAACTAGTTATCAAAAAGAAATTTCAGGTAGTCTCGT
GCAATCACTTGAGGATAGAAAGGATAGTTTGGTACATGCCGTAACAGGAGCTGGAAAAACGGAAATGATCTATGAAGTAG
TCGCTCGAGTGATTGATGAAGGTGGACAAGTTTGTTTGGCCAGTCCTCGTATAGATGTTTGTATTGAATTATACAAGCGA
CTCAGCAAGGATTTTTCTTGTGATATTGATTTGTTACATGGTGATTCTGAACCATATAGTTGCTCCCCTTTGATTATTGC
AACTACCCATCAGCTGTTAAAGTTTTATCACTCTTTTGATCTTATATTAGTTGATGAAGTAGATGCCTTTCCCTACGTCG
ATAATAAAATACTTTATCATGCTGTTAGAACAGCGAAAAAAGCAGATGGTCTAACCATCTATATGACAGCAACTTCGACA
GAAGAATTAGATAAACAAGTCAAAAAAGGAATCTTAAAAAAACGAACTTTATCGCGAAGATTTCATGGGAATCCCTTAAT
AGAACCACGGAATATTTGGCTAACTGGACTAGAGAAAAAGGTTGACTCTGGTAAGATACCATTGAAACTAAAACGATATC
TAGATAGGCAATTTCAAACAGGCTACCCGCTTTTAATTTTTGTACCAGATATTGCTTTTGGAAAGAAAATAAAGAAAGTT
CTTTGTCAACAATATCCCAAAGTTTCTATAGGTTTTGTCTCTAGTAATAGTCCAGATAGATTAGAAGAAGTAGAAATGTT
CAGACATGGTGATTTAAGAGTTCTCATATCAACGACAATTTTAGAAAGGGGAGTGACATTTCCTAAAGTGGATGTCTTTG
TTTTACTAGCTCATCATAAATTATTTACTAGCTCTAGTCTTATTCAGATAGGTGGTCGAGTAGGACGGTCATTAGAGAGA
CCGACAGGAGATCTATTCTTCTTTCATGAAGGGGTTACAAGGGCTATCAAAAAGACTAAAAAAGAAATTCGACAGATGAA
CCATTTGGGAGGCTTCAAGTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-238)

Helicase conserved C-terminal domain (Helicase_C)

(297-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

58.333

99.769

0.582
  comFA/cflA Streptococcus pneumoniae D39

58.333

99.769

0.582
  comFA/cflA Streptococcus pneumoniae R6

58.333

99.769

0.582
  comFA/cflA Streptococcus pneumoniae TIGR4

58.333

99.769

0.582
  comFA/cflA Streptococcus mitis NCTC 12261

57.87

99.769

0.577
  comFA/cflA Streptococcus mitis SK321

56.944

99.769

0.568
  comFA Lactococcus lactis subsp. cremoris KW2

46.853

99.076

0.464
  comFA Bacillus subtilis subsp. subtilis str. 168

36.977

99.307

0.367
  comFA Latilactobacillus sakei subsp. sakei 23K

38.916

93.764

0.365

Multiple sequence alignment