Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB2N10_RS10585 Genome accession   NZ_CP160906
Coordinates   2318089..2319018 (-) Length   309 a.a.
NCBI ID   WP_354623672.1    Uniprot ID   -
Organism   Psychromonas sp. MME1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313089..2324018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2N10_RS10555 - 2313837..2314388 (-) 552 WP_354623541.1 prephenate dehydratase domain-containing protein -
  AB2N10_RS10560 - 2314307..2314663 (-) 357 WP_354623542.1 prephenate dehydratase domain-containing protein -
  AB2N10_RS10565 rpoH 2314733..2315578 (-) 846 WP_354623543.1 RNA polymerase sigma factor RpoH -
  AB2N10_RS10570 - 2315713..2316030 (-) 318 WP_354623544.1 hypothetical protein -
  AB2N10_RS10575 ftsX 2316412..2317401 (-) 990 WP_369433825.1 permease-like cell division protein FtsX -
  AB2N10_RS10580 ftsE 2317394..2318074 (-) 681 WP_354623548.1 cell division ATP-binding protein FtsE -
  AB2N10_RS10585 pilA 2318089..2319018 (-) 930 WP_354623672.1 signal recognition particle-docking protein FtsY Machinery gene
  AB2N10_RS10590 - 2318966..2319502 (+) 537 WP_369434670.1 pentapeptide repeat-containing protein -
  AB2N10_RS10595 rsmD 2319664..2320284 (+) 621 WP_369433826.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB2N10_RS10600 - 2320487..2320720 (-) 234 WP_369433827.1 YecH family metal-binding protein -
  AB2N10_RS10605 nagE 2320869..2322326 (-) 1458 WP_354623552.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  AB2N10_RS10610 nagB 2322630..2323430 (+) 801 WP_354623553.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 33738.64 Da        Isoelectric Point: 5.2578

>NTDB_id=1022232 AB2N10_RS10585 WP_354623672.1 2318089..2319018(-) (pilA) [Psychromonas sp. MME1]
MGFFARFKASLTKTRLSIGSGLFSLFKGKKIDDELFEELEEQLIVADIGVDTTLKIINNLTSHANRKQLKDAEALYALLK
EDLSDILQKVEQPLCIDESKSPYVILMVGVNGVGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNDIPV
IAQQTGADSASVLFDAMDAAKARGVDILIADTAGRLQNKNHLMDELSKVVRIMRKKDSSAPHEIMLTIDASTGQNAVSQV
QLFNQAVGLTGITLTKLDGTAKGGIIFSIADKFNLPIRYIGTGEGIDDLREFNAKEFIDALFSNEEHSE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1022232 AB2N10_RS10585 WP_354623672.1 2318089..2319018(-) (pilA) [Psychromonas sp. MME1]
TTGGGTTTCTTCGCTCGATTTAAAGCTAGCTTAACGAAAACGCGTTTATCTATTGGTAGTGGGCTTTTTTCGCTTTTTAA
AGGTAAGAAAATAGATGATGAGTTGTTTGAAGAGCTAGAGGAGCAGCTAATTGTTGCTGATATTGGCGTTGATACTACCT
TAAAAATTATTAATAACTTAACCTCACATGCTAATCGTAAGCAATTGAAAGATGCTGAAGCATTATATGCGCTCTTAAAA
GAGGATCTATCCGATATTCTACAAAAAGTTGAACAGCCATTATGCATTGATGAAAGTAAGTCTCCCTATGTTATTTTGAT
GGTGGGTGTAAACGGTGTGGGTAAAACAACCACTATAGGTAAATTGGCTAAAAAATATCAGCAGCAGGGCAAGTCTGTGA
TGTTAGCAGCCGGGGATACTTTCCGCGCTGCCGCGGTTGAGCAACTTCAAGTGTGGGGAGAGCGTAATGATATTCCTGTC
ATTGCTCAACAAACTGGTGCTGATAGTGCCTCCGTTTTATTTGATGCGATGGATGCCGCTAAAGCTCGAGGTGTCGATAT
ATTAATAGCGGATACAGCGGGTCGTTTACAGAATAAAAACCACTTAATGGATGAATTAAGTAAAGTTGTTCGCATTATGC
GTAAGAAAGATTCCAGTGCACCTCACGAAATTATGCTTACGATTGACGCTAGTACTGGGCAAAACGCCGTTAGCCAAGTA
CAATTATTTAACCAAGCCGTTGGTTTAACAGGAATTACATTAACAAAGCTAGATGGTACTGCAAAGGGGGGAATTATATT
TTCGATTGCTGATAAATTTAACTTACCCATTCGTTACATCGGGACTGGTGAAGGGATTGATGATTTGAGGGAGTTTAATG
CCAAAGAGTTTATCGATGCACTTTTCTCGAATGAGGAACATTCAGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(19-83)

SRP54-type protein, GTPase domain (SRP54)

(103-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.974

97.735

0.528

Multiple sequence alignment