Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABX298_RS13110 Genome accession   NZ_CP160798
Coordinates   2956671..2957210 (+) Length   179 a.a.
NCBI ID   WP_087503317.1    Uniprot ID   -
Organism   Pseudomonas sp. X4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2951671..2962210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX298_RS13095 (ABX298_13095) bfr 2951703..2952167 (+) 465 WP_003257116.1 bacterioferritin -
  ABX298_RS13100 (ABX298_13100) uvrA 2952303..2955137 (-) 2835 WP_025337492.1 excinuclease ABC subunit UvrA -
  ABX298_RS13105 (ABX298_13105) - 2955267..2956661 (+) 1395 WP_025337493.1 MFS transporter -
  ABX298_RS13110 (ABX298_13110) ssb 2956671..2957210 (+) 540 WP_087503317.1 single-stranded DNA-binding protein Machinery gene
  ABX298_RS13115 (ABX298_13115) - 2957521..2957979 (+) 459 WP_170929319.1 hypothetical protein -
  ABX298_RS13120 (ABX298_13120) - 2958212..2959594 (-) 1383 WP_317410069.1 PLP-dependent aminotransferase family protein -
  ABX298_RS13125 (ABX298_13125) - 2959794..2960579 (+) 786 WP_025337496.1 TSUP family transporter -
  ABX298_RS13130 (ABX298_13130) - 2960601..2961362 (+) 762 WP_075044435.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19802.90 Da        Isoelectric Point: 5.9286

>NTDB_id=1022081 ABX298_RS13110 WP_087503317.1 2956671..2957210(+) (ssb) [Pseudomonas sp. X4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQYNQAPRQQAPRPQQAPQRPAPQ
QPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1022081 ABX298_RS13110 WP_087503317.1 2956671..2957210(+) (ssb) [Pseudomonas sp. X4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAAGGTGGCGGCAACTATGGTG
GCGGCCAGCAGCAGTACAACCAGGCCCCACGCCAGCAGGCCCCGCGCCCGCAACAGGCTCCTCAGCGCCCGGCACCGCAG
CAGCCAGCCCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.906

100

0.575
  ssb Neisseria meningitidis MC58

50

100

0.508
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.508
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.497

Multiple sequence alignment