Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABZM97_RS18400 Genome accession   NZ_CP160797
Coordinates   3679974..3680663 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus vallismortis strain BL-01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3674974..3685663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS18365 (ABZM97_18365) flgN 3675158..3675640 (-) 483 WP_087991556.1 flagellar protein FlgN -
  ABZM97_RS18370 (ABZM97_18370) flgM 3675655..3675921 (-) 267 WP_087991557.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABZM97_RS18375 (ABZM97_18375) - 3676001..3676420 (-) 420 WP_148962628.1 TIGR03826 family flagellar region protein -
  ABZM97_RS18380 (ABZM97_18380) comFC 3676490..3677212 (-) 723 WP_202327956.1 double zinc ribbon domain-containing protein Machinery gene
  ABZM97_RS18385 (ABZM97_18385) - 3677176..3677472 (-) 297 WP_087991559.1 late competence development ComFB family protein -
  ABZM97_RS18390 (ABZM97_18390) comFA 3677532..3678923 (-) 1392 WP_367387505.1 ATP-dependent helicase ComFA Machinery gene
  ABZM97_RS18395 (ABZM97_18395) - 3679031..3679876 (-) 846 WP_087991560.1 DegV family protein -
  ABZM97_RS18400 (ABZM97_18400) degU 3679974..3680663 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABZM97_RS18405 (ABZM97_18405) degS 3680746..3681903 (-) 1158 WP_087991561.1 two-component sensor histidine kinase DegS Regulator
  ABZM97_RS18410 (ABZM97_18410) - 3682120..3682770 (+) 651 WP_087991562.1 YigZ family protein -
  ABZM97_RS18415 (ABZM97_18415) - 3682773..3683885 (+) 1113 WP_087991563.1 LCP family protein -
  ABZM97_RS18420 (ABZM97_18420) - 3683957..3685033 (-) 1077 WP_087991564.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1022060 ABZM97_RS18400 WP_003219701.1 3679974..3680663(-) (degU) [Bacillus vallismortis strain BL-01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1022060 ABZM97_RS18400 WP_003219701.1 3679974..3680663(-) (degU) [Bacillus vallismortis strain BL-01]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGGGACGACGGAGATGAAGCGGCTCGTATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGCGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGATGAAAATTATGTAACACATGCCCTGAAAACCGGCGCGAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGAGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGTCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTACCCTGAAATCCGC
AGACCATTACATATCTTAACTAGACGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATCGG
TGAATCATTGTTTATCAGTGAGAAAACCGTCAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment