Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABZM97_RS18390 Genome accession   NZ_CP160797
Coordinates   3677532..3678923 (-) Length   463 a.a.
NCBI ID   WP_367387505.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672532..3683923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS18355 (ABZM97_18355) flgL 3672710..3673606 (-) 897 WP_087991554.1 flagellar hook-associated protein FlgL -
  ABZM97_RS18360 (ABZM97_18360) flgK 3673616..3675139 (-) 1524 WP_087991555.1 flagellar hook-associated protein FlgK -
  ABZM97_RS18365 (ABZM97_18365) flgN 3675158..3675640 (-) 483 WP_087991556.1 flagellar protein FlgN -
  ABZM97_RS18370 (ABZM97_18370) flgM 3675655..3675921 (-) 267 WP_087991557.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABZM97_RS18375 (ABZM97_18375) - 3676001..3676420 (-) 420 WP_148962628.1 TIGR03826 family flagellar region protein -
  ABZM97_RS18380 (ABZM97_18380) comFC 3676490..3677212 (-) 723 WP_202327956.1 double zinc ribbon domain-containing protein Machinery gene
  ABZM97_RS18385 (ABZM97_18385) - 3677176..3677472 (-) 297 WP_087991559.1 late competence development ComFB family protein -
  ABZM97_RS18390 (ABZM97_18390) comFA 3677532..3678923 (-) 1392 WP_367387505.1 ATP-dependent helicase ComFA Machinery gene
  ABZM97_RS18395 (ABZM97_18395) - 3679031..3679876 (-) 846 WP_087991560.1 DegV family protein -
  ABZM97_RS18400 (ABZM97_18400) degU 3679974..3680663 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABZM97_RS18405 (ABZM97_18405) degS 3680746..3681903 (-) 1158 WP_087991561.1 two-component sensor histidine kinase DegS Regulator
  ABZM97_RS18410 (ABZM97_18410) - 3682120..3682770 (+) 651 WP_087991562.1 YigZ family protein -
  ABZM97_RS18415 (ABZM97_18415) - 3682773..3683885 (+) 1113 WP_087991563.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52693.88 Da        Isoelectric Point: 9.7976

>NTDB_id=1022059 ABZM97_RS18390 WP_367387505.1 3677532..3678923(-) (comFA) [Bacillus vallismortis strain BL-01]
MVEPDEKNITFSKELQQTLQGRHLLRTELPFSDEMIEWHIKNGYICAQYSISKNKREYRCNRCGQNDQRYFSFYYLSRKK
QLYCRSCVMMGRVSEDVLLYSWKEEDESRWKPIKLTWNGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNEGLRVCIATPRTDVVLELAPRLKAAFQGADIAALYGGGEDKGCLSPLMISTTHQLLRYKDAFDVIIVDEVDAFPY
SADQTLQFAVQKAKKKNSTLVYLSATPSKELKRKTLNGQLHSVRIPARHHQKPLPEPRFLWCGNWKKKLNQNKIPPAVKR
WIAFHVKEGRSVFLFVPSVSVLEKAAACFKDVHCRTASVHAEDKDRKEKVKQFRDGQFDLLITTTILERGVTVPKVQTGI
LGAESPIFTESALVQIAGRTGRHKEHANGDVIFFHYGKTKSMLDAKKHIKEMNALAAKNERTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1022059 ABZM97_RS18390 WP_367387505.1 3677532..3678923(-) (comFA) [Bacillus vallismortis strain BL-01]
CTGGTTGAGCCAGATGAAAAGAACATTACTTTCTCAAAAGAATTACAGCAGACGCTCCAAGGCCGTCATTTGCTCAGAAC
TGAACTCCCCTTTTCCGATGAGATGATTGAATGGCATATCAAGAACGGCTATATCTGCGCTCAATACTCTATATCCAAAA
ATAAACGGGAGTATAGGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTATTACTTATCTAGAAAGAAG
CAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGCGAGGATGTGCTTTTATATTCATGGAAAGAGGAAGATGA
ATCCCGTTGGAAGCCTATCAAGCTGACTTGGAATGGCAAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTTCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGTTATTTCCCGGTATA
GAATCAGCGTTAAACGAAGGATTGCGAGTATGTATTGCAACACCCCGCACCGATGTTGTATTAGAGCTTGCTCCGAGACT
CAAGGCCGCCTTTCAGGGCGCTGACATTGCGGCACTTTACGGAGGCGGCGAGGACAAAGGGTGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGACGCGTTCGATGTTATCATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCTAAAAAGAAAAACAGCACCCTTGTTTATTTAAGTGCAACACC
CTCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGCTGCATTCAGTTCGCATTCCAGCAAGACACCACCAGAAACCTT
TGCCAGAACCGCGCTTTCTATGGTGCGGAAACTGGAAAAAGAAATTAAACCAAAACAAAATTCCGCCAGCGGTAAAAAGA
TGGATAGCGTTTCATGTGAAAGAAGGGAGGTCTGTGTTTTTATTTGTTCCCTCCGTTTCTGTTTTGGAAAAGGCAGCTGC
CTGCTTTAAAGATGTTCATTGCCGAACAGCGTCTGTTCATGCGGAAGATAAGGACAGAAAAGAAAAAGTAAAGCAATTTA
GAGACGGTCAGTTTGATCTTTTAATCACAACAACAATATTAGAGAGAGGTGTCACTGTCCCCAAGGTACAAACAGGGATA
TTAGGGGCCGAATCGCCTATCTTTACGGAAAGCGCACTTGTGCAAATCGCAGGAAGAACCGGCCGGCATAAAGAACACGC
GAACGGCGATGTTATTTTCTTTCACTACGGAAAAACAAAGAGCATGCTGGATGCAAAAAAGCATATAAAAGAAATGAATG
CATTGGCGGCAAAAAATGAAAGAACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

87.905

100

0.879

Multiple sequence alignment