Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB1723_RS10995 Genome accession   NZ_CP160633
Coordinates   2367916..2368974 (-) Length   352 a.a.
NCBI ID   WP_367380207.1    Uniprot ID   -
Organism   Stenotrophomonas cyclobalanopsidis strain Ed1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362916..2373974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1723_RS10975 (AB1723_10970) - 2363912..2365888 (-) 1977 WP_367380204.1 type IV pilus secretin PilQ -
  AB1723_RS10980 (AB1723_10975) - 2365910..2366418 (-) 509 Protein_2138 pilus assembly protein PilP -
  AB1723_RS10985 (AB1723_10980) - 2366445..2367098 (-) 654 WP_367380205.1 type 4a pilus biogenesis protein PilO -
  AB1723_RS10990 (AB1723_10985) - 2367095..2367916 (-) 822 WP_367380206.1 PilN domain-containing protein -
  AB1723_RS10995 (AB1723_10990) pilM 2367916..2368974 (-) 1059 WP_367380207.1 pilus assembly protein PilM Machinery gene
  AB1723_RS11000 (AB1723_10995) - 2369194..2371614 (+) 2421 WP_367380208.1 penicillin-binding protein 1A -
  AB1723_RS11005 (AB1723_11000) - 2371788..2372438 (+) 651 WP_367380209.1 hypothetical protein -
  AB1723_RS11010 (AB1723_11005) - 2372514..2373251 (-) 738 WP_367380210.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37710.32 Da        Isoelectric Point: 4.3963

>NTDB_id=1021733 AB1723_RS10995 WP_367380207.1 2367916..2368974(-) (pilM) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMSRSGSKAKLAAAA
VAGSAVITKLIPMPADLDEADMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVASELPVSHDGVVALVDIGATMTTLNVLRSGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYDVEVLEPFKEATVQQISRLLQFFYAGSEYNRVDHIVLAGGCAVLAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAQALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1021733 AB1723_RS10995 WP_367380207.1 2367916..2368974(-) (pilM) [Stenotrophomonas cyclobalanopsidis strain Ed1]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATTAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGCGGCAATCGTTTCCGCGTGGAACACTACGCCGTGGAACCGTTGCCGCCGAATGCTGTGGTTGAAAAAAACATCG
TCGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGATGAGCCGTTCCGGCAGCAAGGCCAAGCTGGCCGCGGCCGCC
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATCCCGATGCCGGCCGATCTCGACGAAGCCGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCTGCCTCGCGCTCGGAAAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTCGGC
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAGCGAGCTGCCGGT
GTCCCACGACGGTGTGGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTGAACGTCCTGCGCAGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAAATCATGCGCCGCTACGGCCTGAGCTATGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGACGTGGAAGTGCTGGAGCCCTTCAAGGAAGCGACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGTGAATACAACCGGGTCGACCACATCGTGCTCGCCGGCG
GTTGCGCCGTGCTGGCCGGTCTGCCGGAGATGGTCGAAGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGCAGGCGCAGGCGCTTGCCCAGGATGCCCCCGCGCTGATGATCGCTACCGGTCTGGC
ACTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466

Multiple sequence alignment