Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1748_RS03355 Genome accession   NZ_CP160631
Coordinates   726453..726992 (+) Length   179 a.a.
NCBI ID   WP_111140209.1    Uniprot ID   -
Organism   Pantoea sp. Ep11b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 721453..731992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1748_RS03340 (AB1748_03340) - 721733..722056 (+) 324 WP_111140206.1 MmcQ/YjbR family DNA-binding protein -
  AB1748_RS03345 (AB1748_03345) - 722105..723169 (-) 1065 WP_293774286.1 NAD(P)-dependent alcohol dehydrogenase -
  AB1748_RS03350 (AB1748_03350) uvrA 723401..726229 (-) 2829 WP_111140208.1 excinuclease ABC subunit UvrA -
  AB1748_RS03355 (AB1748_03355) ssb 726453..726992 (+) 540 WP_111140209.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AB1748_RS03360 (AB1748_03360) - 727251..728078 (+) 828 WP_367396004.1 AraC family ligand binding domain-containing protein -
  AB1748_RS03365 (AB1748_03365) - 728155..729114 (+) 960 WP_367396005.1 DMT family transporter -
  AB1748_RS03370 (AB1748_03370) - 730040..730435 (-) 396 WP_111140212.1 transposase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19401.28 Da        Isoelectric Point: 5.2456

>NTDB_id=1021704 AB1748_RS03355 WP_111140209.1 726453..726992(+) (ssb) [Pantoea sp. Ep11b]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAQGGGNNNGWGQPQQPQGNNNQFSGGAQSRPQQQPQS
APASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1021704 AB1748_RS03355 WP_111140209.1 726453..726992(+) (ssb) [Pantoea sp. Ep11b]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCCAATGG
CGGCGCGGTTGCGAACATTACGCTGGCGACGTCTGAGAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGCGAATACCTGAAAAAAGGATCGCAGGTCTACATC
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACAGAAGTGGTCGTGAACGTCGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGTAACGCCGGTGCGCAGGGCGGTGGCAACAACAACGGCTGGG
GTCAGCCGCAGCAGCCGCAGGGCAACAACAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGCCACAGAGC
GCACCTGCCAGCAACAACAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.43

100

0.732
  ssb Glaesserella parasuis strain SC1401

58.152

100

0.598
  ssb Neisseria meningitidis MC58

46.995

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48

Multiple sequence alignment