Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1W24_RS00425 Genome accession   NZ_CP160457
Coordinates   78041..78541 (+) Length   166 a.a.
NCBI ID   WP_012415783.1    Uniprot ID   Q2L1W7
Organism   Bordetella avium strain 4094     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 73041..83541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1W24_RS00415 (AB1W24_00415) uvrA 73569..76427 (-) 2859 WP_114851574.1 excinuclease ABC subunit UvrA -
  AB1W24_RS00420 (AB1W24_00420) - 76608..77786 (+) 1179 WP_114851750.1 MFS transporter -
  AB1W24_RS00425 (AB1W24_00425) ssb 78041..78541 (+) 501 WP_012415783.1 single-stranded DNA-binding protein Machinery gene
  AB1W24_RS00430 (AB1W24_00430) - 78767..80236 (+) 1470 WP_012415784.1 lipopolysaccharide biosynthesis protein -
  AB1W24_RS00435 (AB1W24_00435) - 80274..81668 (+) 1395 WP_127811888.1 glycosyltransferase family 39 protein -
  AB1W24_RS00440 (AB1W24_00440) - 81665..82693 (+) 1029 WP_012415786.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18129.19 Da        Isoelectric Point: 5.9702

>NTDB_id=1021296 AB1W24_RS00425 WP_012415783.1 78041..78541(+) (ssb) [Bordetella avium strain 4094]
MASVNKVILVGNLGRDPEVRYSPDGAAICNLSLATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGGEGGGFGGGGYDEAPRQQRAPAQRPAPQQQRPAAPMGGGAANLADM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1021296 AB1W24_RS00425 WP_012415783.1 78041..78541(+) (ssb) [Bordetella avium strain 4094]
ATGGCATCTGTCAACAAAGTCATTCTCGTCGGCAACCTGGGGCGTGATCCCGAAGTTCGCTATAGCCCGGACGGCGCCGC
CATCTGCAATCTCTCGCTGGCCACCACCTCTCAATGGAAGGATAAGGCCAGCGGCGAGCGCCGCGAAGAAACCGAGTGGC
ACCGTGTCGTCATGTACAACCGCCTGGCTGAAATCGCGGGCGAGTACCTGAAAAAAGGCCGTTCGGTCTACATCGAAGGC
CGCTTGAAAACCCGCAAGTGGCAAGATAAAGACACGGGCGCTGACCGCTACAGCACTGAAATCGTCGCCGACCAGATGCA
AATGCTGGGTGGCCGTGACGGCGGTGAAGGGGGCGGCTTTGGTGGCGGCGGCTACGACGAAGCGCCGCGCCAGCAACGCG
CACCCGCGCAACGCCCGGCCCCGCAGCAGCAACGTCCTGCCGCGCCGATGGGTGGCGGTGCGGCCAATCTGGCCGACATG
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2L1W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.226

100

0.596
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.548
  ssb Neisseria gonorrhoeae MS11

52

100

0.548
  ssb Neisseria meningitidis MC58

50.857

100

0.536

Multiple sequence alignment