Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZP31_RS13885 Genome accession   NZ_CP160437
Coordinates   2952093..2952677 (-) Length   194 a.a.
NCBI ID   WP_005017910.1    Uniprot ID   A0A062C4D5
Organism   Acinetobacter sp. FL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2947093..2957677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS13865 (ABZP31_13865) katE 2947318..2949441 (+) 2124 WP_138000923.1 catalase HPII -
  ABZP31_RS13870 (ABZP31_13870) - 2949755..2950402 (+) 648 WP_111282560.1 hypothetical protein -
  ABZP31_RS13875 (ABZP31_13875) - 2950679..2951005 (+) 327 WP_005024124.1 hypothetical protein -
  ABZP31_RS13880 (ABZP31_13880) - 2951081..2951947 (+) 867 WP_262475476.1 SDR family oxidoreductase -
  ABZP31_RS13885 (ABZP31_13885) ssb 2952093..2952677 (-) 585 WP_005017910.1 single-stranded DNA-binding protein Machinery gene
  ABZP31_RS13890 (ABZP31_13890) - 2952729..2954093 (-) 1365 WP_262475475.1 MFS transporter -
  ABZP31_RS13895 (ABZP31_13895) - 2954242..2955324 (-) 1083 WP_262475473.1 DUF475 domain-containing protein -
  ABZP31_RS13900 (ABZP31_13900) tenA 2955565..2956239 (+) 675 WP_262475471.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21073.77 Da        Isoelectric Point: 6.4820

>NTDB_id=1021148 ABZP31_RS13885 WP_005017910.1 2952093..2952677(-) (ssb) [Acinetobacter sp. FL]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGDQAGAGFGGDQGYGQPRFNNNQGSQGGYGNGNQQGSGFNNNSNQG
GGYGNNNPGGFAPKAPQSAPASQVPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1021148 ABZP31_RS13885 WP_005017910.1 2952093..2952677(-) (ssb) [Acinetobacter sp. FL]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGGACTTTAGGGCGCGATCCAGAGACAAAAACTTTCCCAAATGGCGGCTC
TTTAACACAGTTTTCTATCGCAACGAGTGAATCGTGGACAGATAAAAGCACAGGTGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTGCTACACAACCGTCTAGGTGAAATTGCCCAGCAATATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCATTGCGTACCCGTCAATGGACCGACCAGAACGGTCAGGAACGTTATACTACCGAGATTCGTGGTGAACAGATGCAGAT
GCTAGACTCAGGCCGACAGCAGGGCGATCAGGCAGGTGCAGGTTTTGGTGGTGATCAAGGCTATGGTCAACCACGTTTCA
ATAATAATCAGGGTAGCCAGGGCGGTTATGGTAACGGCAACCAGCAGGGTAGCGGTTTTAATAATAACAGCAACCAAGGT
GGCGGTTATGGCAATAATAACCCGGGCGGTTTCGCACCTAAAGCTCCTCAGTCAGCTCCAGCCTCTCAAGTTCCGGCTGA
CCTGGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062C4D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.471

100

0.541
  ssb Vibrio cholerae strain A1552

44.39

100

0.469
  ssb Neisseria gonorrhoeae MS11

41

100

0.423
  ssb Neisseria meningitidis MC58

40.5

100

0.418

Multiple sequence alignment