Detailed information NTG1021102

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABZP20_RS14000
• Genome accession: NZ_CP160433
• Coordinates: 2907405..2908286 (+)
• Length: 293 a.a.
• NCBI ID: WP_012436460.1
• Uniprot ID: A0AAD2BS56
• Organism: Ralstonia sp. CP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2902405..2913286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZP20_RS13985 (ABZP20_13985)	-	2902820..2904094 (+)	1275	WP_012436459.1	HlyC/CorC family transporter	-
ABZP20_RS13990 (ABZP20_13990)	pilB	2904354..2906081 (+)	1728	WP_004633029.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABZP20_RS13995 (ABZP20_13995)	pilG	2906126..2907400 (+)	1275	WP_004633031.1	type II secretion system F family protein	Machinery gene
ABZP20_RS14000 (ABZP20_14000)	pilD	2907405..2908286 (+)	882	WP_012436460.1	A24 family peptidase	Machinery gene
ABZP20_RS14005 (ABZP20_14005)	coaE	2908300..2908914 (+)	615	WP_004633035.1	dephospho-CoA kinase	-
ABZP20_RS14010 (ABZP20_14010)	zapD	2909050..2909808 (+)	759	WP_004633038.1	cell division protein ZapD	-
ABZP20_RS14015 (ABZP20_14015)	-	2909817..2910020 (+)	204	WP_004633040.1	DNA gyrase inhibitor YacG	-
ABZP20_RS14020 (ABZP20_14020)	-	2910013..2910474 (-)	462	WP_037022392.1	NUDIX domain-containing protein	-
ABZP20_RS14025 (ABZP20_14025)	-	2910452..2911336 (-)	885	WP_012436462.1	ATP-binding protein	-
ABZP20_RS14030 (ABZP20_14030)	argJ	2911353..2912582 (-)	1230	WP_012436463.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31558.53 Da
• Isoelectric Point: 6.7369

>NTDB_id=1021102 ABZP20_RS14000 WP_012436460.1 2907405..2908286(+) (pilD) [Ralstonia sp. CP]
MPEMFVIPTLAQLPAWFVVAAGGLVGLLVGSFLNVVIHRLPRMIEREEANYIAELRDEPLPHPDAYNLVVPRSACPSCGH
QIKAIENIPVLSWLALHGRCSACKAPISWRYPAVELVTGLLTAACLWHFGPTWVAVASAVLLWFLIAGTMIDADTQLLPD
AITQPLLWLGLGVNLFGMFAHLQDAVVGAMAGYLFLWSIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLVLLSS
VVGLVFGLVRIARGATSESPFSFGPFIAGAGVIALLAGPQLLMMAGLGPLLAP

Nucleotide

• Length: 882 bp

>NTDB_id=1021102 ABZP20_RS14000 WP_012436460.1 2907405..2908286(+) (pilD) [Ralstonia sp. CP]
ATGCCTGAGATGTTCGTCATCCCCACGTTGGCGCAACTGCCGGCGTGGTTTGTAGTTGCCGCAGGCGGGCTGGTCGGCTT
GCTGGTCGGCAGCTTCCTGAACGTGGTGATCCACCGTCTGCCGCGCATGATCGAGCGGGAGGAAGCCAACTACATCGCAG
AACTGCGTGATGAGCCGCTGCCTCACCCCGACGCATACAACCTGGTCGTGCCGCGCTCGGCGTGCCCGTCGTGTGGTCAT
CAGATCAAAGCGATCGAGAACATCCCCGTGTTGAGCTGGCTTGCGCTGCACGGCCGGTGCAGTGCCTGCAAGGCGCCCAT
CTCGTGGCGCTATCCCGCTGTGGAACTGGTCACTGGTCTGCTGACCGCGGCCTGCCTGTGGCACTTCGGCCCGACGTGGG
TGGCGGTCGCATCGGCGGTCCTGCTGTGGTTCCTGATCGCCGGCACCATGATCGACGCCGATACGCAACTGTTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGGCTGGGCGTGAACCTGTTCGGCATGTTTGCGCACTTGCAGGACGCGGTCGT
CGGCGCGATGGCCGGTTACCTGTTCCTGTGGTCGATCTATTGGGCCTACAAGCTGCTGCGCGGCCGCGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGCCGCACTCGGCGCGTGGTTCGGCTGGCAGGCGCTGCCGTTGCTGGTGCTGCTCTCGTCC
GTCGTGGGACTGGTGTTTGGGCTCGTGCGCATTGCGCGCGGCGCGACGAGCGAATCGCCGTTCTCGTTCGGACCGTTCAT
TGCCGGGGCCGGCGTGATCGCATTGCTGGCCGGCCCGCAGCTGCTCATGATGGCAGGCCTAGGCCCGCTCCTTGCGCCAT
AA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.506	92.491	0.495
pilD	Vibrio campbellii strain DS40M4	50.542	94.539	0.478
pilD	Neisseria gonorrhoeae MS11	48.134	91.468	0.44
pilD	Acinetobacter nosocomialis M2	46.182	93.857	0.433
pilD	Acinetobacter baumannii D1279779	47.348	90.102	0.427