Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABZP20_RS01380 Genome accession   NZ_CP160433
Coordinates   291074..291631 (+) Length   185 a.a.
NCBI ID   WP_009239176.1    Uniprot ID   -
Organism   Ralstonia sp. CP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 286074..296631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS01365 (ABZP20_01365) - 286183..286668 (-) 486 WP_004633365.1 adenosine-specific kinase -
  ABZP20_RS01370 (ABZP20_01370) uvrA 286752..289616 (-) 2865 WP_009239177.1 excinuclease ABC subunit UvrA -
  ABZP20_RS01375 (ABZP20_01375) - 289859..291022 (+) 1164 WP_012434894.1 MFS transporter -
  ABZP20_RS01380 (ABZP20_01380) ssb 291074..291631 (+) 558 WP_009239176.1 single-stranded DNA-binding protein Machinery gene
  ABZP20_RS01385 (ABZP20_01385) - 291943..292992 (+) 1050 WP_167313370.1 site-specific integrase -
  ABZP20_RS01390 (ABZP20_01390) - 292985..294574 (+) 1590 WP_104656250.1 site-specific integrase -
  ABZP20_RS01395 (ABZP20_01395) - 294571..296625 (+) 2055 WP_104656251.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19130.83 Da        Isoelectric Point: 5.9741

>NTDB_id=1021084 ABZP20_RS01380 WP_009239176.1 291074..291631(+) (ssb) [Ralstonia sp. CP]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMKEATEWHRIAFFGRLAEIAGEYLKKGSSVYIEG
RLKTRQWEKDGQKQYSTEIVADQMQMLGGRGGEGGGSSGGGGGGYSRGGEGGGGGYGGGRSQGQSQGQGGGYTRGGEGGG
GQGGGARRQPATSNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1021084 ABZP20_RS01380 WP_009239176.1 291074..291631(+) (ssb) [Ralstonia sp. CP]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCTGAAACGCGTTACATGCCCAGTGGCGATGC
TGTCACCAACATTCGCGTGGCAACCACCGACCGCTACAAAGACAAGGCCAGCGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCTGAAATTGCCGGTGAATACCTGAAGAAGGGTTCGTCGGTCTACATCGAAGGC
CGGCTCAAGACCCGTCAATGGGAAAAGGACGGCCAGAAGCAATACAGCACGGAAATCGTCGCAGACCAAATGCAGATGCT
CGGCGGCCGTGGTGGTGAGGGCGGTGGCAGCAGCGGTGGCGGTGGTGGTGGCTACTCGCGTGGCGGTGAAGGCGGCGGCG
GTGGTTACGGCGGTGGCCGTAGCCAAGGTCAAAGCCAAGGCCAAGGCGGCGGCTACACGCGCGGCGGCGAAGGTGGCGGT
GGCCAAGGCGGTGGCGCGCGTCGCCAGCCTGCAACGTCGAACGGTTTTGAGGATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.917

100

0.497
  ssb Glaesserella parasuis strain SC1401

48.936

100

0.497
  ssb Neisseria meningitidis MC58

43.316

100

0.438
  ssb Neisseria gonorrhoeae MS11

43.316

100

0.438

Multiple sequence alignment