Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | AB0A83_RS19495 | Genome accession | NZ_CP160405 |
| Coordinates | 4316705..4317865 (-) | Length | 386 a.a. |
| NCBI ID | WP_150051363.1 | Uniprot ID | - |
| Organism | Methylomonas sp. HYX-M1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4311705..4322865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0A83_RS19475 (AB0A83_19475) | - | 4311770..4315219 (+) | 3450 | WP_367154996.1 | AAA family ATPase | - |
| AB0A83_RS19480 (AB0A83_19480) | lexA | 4315534..4316169 (+) | 636 | WP_367154997.1 | transcriptional repressor LexA | - |
| AB0A83_RS19485 (AB0A83_19485) | - | 4316179..4316331 (+) | 153 | WP_190303340.1 | hypothetical protein | - |
| AB0A83_RS19490 (AB0A83_19490) | - | 4316341..4316667 (+) | 327 | WP_150051361.1 | NGG1p interacting factor NIF3 | - |
| AB0A83_RS19495 (AB0A83_19495) | pilU | 4316705..4317865 (-) | 1161 | WP_150051363.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AB0A83_RS19500 (AB0A83_19500) | - | 4317996..4319039 (+) | 1044 | WP_150052100.1 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | - |
| AB0A83_RS19505 (AB0A83_19505) | - | 4319036..4319260 (+) | 225 | WP_367154998.1 | sulfurtransferase TusA family protein | - |
| AB0A83_RS19510 (AB0A83_19510) | argJ | 4319283..4320497 (+) | 1215 | WP_150051367.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| AB0A83_RS19515 (AB0A83_19515) | - | 4320498..4321469 (+) | 972 | WP_367154999.1 | Nudix family hydrolase | - |
| AB0A83_RS19520 (AB0A83_19520) | yacG | 4321441..4321644 (-) | 204 | WP_150051371.1 | DNA gyrase inhibitor YacG | - |
| AB0A83_RS19525 (AB0A83_19525) | zapD | 4321647..4322417 (-) | 771 | WP_150051373.1 | cell division protein ZapD | - |
Sequence
Protein
Download Length: 386 a.a. Molecular weight: 42684.73 Da Isoelectric Point: 6.0986
>NTDB_id=1021009 AB0A83_RS19495 WP_150051363.1 4316705..4317865(-) (pilU) [Methylomonas sp. HYX-M1]
MEFKDYLKILVQHDGSDLYLTQNAPPAAKFQGTLKPLENVKLTAERLREIANSIMDADQRASFEHKPEMNLAIAEPGIGR
FRVNIFKQRNTHALVIRNIKVDIPNADALGLPQILKDKIMEKRGLILFVGGTGSGKSTSLAALIDYRNGNSSGHIITIED
PIEYVHPHKRSLVNQREVGVDTLSYEDALKNTLRQAPDVILIGEIRSQETMEHALAFAETGHLCLSTLHANNANQALDRI
INFFPEERRPQLLMDLSLNLQAFVSQRLVPTVEGKRVAAIEILLGTKLVSDLIQKGDVHAIKEAMEKSENIGMQTFDSHL
LKLYKSGVISLEEALRNSDSPNNLKLKINLSEGLGSATAAKDKPAGDGGLSLQAIIKDEDENEDEH
MEFKDYLKILVQHDGSDLYLTQNAPPAAKFQGTLKPLENVKLTAERLREIANSIMDADQRASFEHKPEMNLAIAEPGIGR
FRVNIFKQRNTHALVIRNIKVDIPNADALGLPQILKDKIMEKRGLILFVGGTGSGKSTSLAALIDYRNGNSSGHIITIED
PIEYVHPHKRSLVNQREVGVDTLSYEDALKNTLRQAPDVILIGEIRSQETMEHALAFAETGHLCLSTLHANNANQALDRI
INFFPEERRPQLLMDLSLNLQAFVSQRLVPTVEGKRVAAIEILLGTKLVSDLIQKGDVHAIKEAMEKSENIGMQTFDSHL
LKLYKSGVISLEEALRNSDSPNNLKLKINLSEGLGSATAAKDKPAGDGGLSLQAIIKDEDENEDEH
Nucleotide
Download Length: 1161 bp
>NTDB_id=1021009 AB0A83_RS19495 WP_150051363.1 4316705..4317865(-) (pilU) [Methylomonas sp. HYX-M1]
ATGGAATTTAAAGACTATTTGAAGATATTGGTTCAACACGATGGTTCGGATTTGTATTTGACTCAAAATGCACCGCCTGC
CGCGAAGTTTCAGGGAACGCTGAAGCCGTTGGAAAATGTTAAATTGACCGCCGAGCGGCTGCGCGAGATTGCAAACAGCA
TTATGGATGCCGACCAGCGTGCCAGCTTCGAGCATAAGCCGGAGATGAACTTGGCGATAGCCGAGCCGGGCATCGGCCGA
TTTCGGGTCAATATTTTCAAGCAGCGCAATACGCATGCCTTGGTCATCCGCAACATTAAAGTCGATATTCCTAATGCCGA
CGCGCTAGGATTGCCGCAAATCTTGAAAGACAAAATCATGGAAAAACGCGGTCTGATTTTGTTTGTAGGCGGCACAGGGT
CCGGAAAGTCGACATCGTTGGCAGCATTAATCGATTATCGCAACGGTAATTCTTCCGGTCACATCATTACCATTGAAGAC
CCTATCGAATACGTCCACCCGCATAAACGATCGCTGGTTAACCAGCGTGAAGTCGGGGTAGATACTTTGAGTTACGAAGA
CGCGTTGAAAAATACCTTGCGGCAAGCGCCGGACGTGATTCTGATCGGGGAAATTCGCAGCCAGGAAACCATGGAGCATG
CATTGGCATTCGCTGAAACCGGGCATTTATGCCTTTCGACATTGCACGCCAATAATGCCAACCAAGCCCTGGATAGAATT
ATCAATTTTTTTCCTGAAGAACGCCGGCCGCAGCTGCTAATGGATTTGTCGCTGAATTTGCAAGCTTTTGTATCCCAGCG
TTTAGTACCCACGGTGGAAGGAAAACGGGTGGCGGCTATTGAAATCCTCCTGGGAACCAAGTTAGTCAGCGATTTGATTC
AAAAGGGCGACGTGCATGCCATCAAGGAGGCCATGGAAAAATCCGAAAATATCGGTATGCAGACTTTCGATAGTCACTTG
CTGAAACTATATAAAAGTGGAGTGATTTCCTTGGAGGAGGCTTTGCGCAATTCCGATTCACCTAACAACTTGAAATTGAA
AATCAATTTAAGCGAGGGTTTAGGCTCTGCGACGGCTGCTAAAGACAAGCCGGCGGGTGACGGCGGCTTGTCGCTGCAGG
CAATCATCAAAGACGAGGACGAAAATGAAGACGAGCACTGA
ATGGAATTTAAAGACTATTTGAAGATATTGGTTCAACACGATGGTTCGGATTTGTATTTGACTCAAAATGCACCGCCTGC
CGCGAAGTTTCAGGGAACGCTGAAGCCGTTGGAAAATGTTAAATTGACCGCCGAGCGGCTGCGCGAGATTGCAAACAGCA
TTATGGATGCCGACCAGCGTGCCAGCTTCGAGCATAAGCCGGAGATGAACTTGGCGATAGCCGAGCCGGGCATCGGCCGA
TTTCGGGTCAATATTTTCAAGCAGCGCAATACGCATGCCTTGGTCATCCGCAACATTAAAGTCGATATTCCTAATGCCGA
CGCGCTAGGATTGCCGCAAATCTTGAAAGACAAAATCATGGAAAAACGCGGTCTGATTTTGTTTGTAGGCGGCACAGGGT
CCGGAAAGTCGACATCGTTGGCAGCATTAATCGATTATCGCAACGGTAATTCTTCCGGTCACATCATTACCATTGAAGAC
CCTATCGAATACGTCCACCCGCATAAACGATCGCTGGTTAACCAGCGTGAAGTCGGGGTAGATACTTTGAGTTACGAAGA
CGCGTTGAAAAATACCTTGCGGCAAGCGCCGGACGTGATTCTGATCGGGGAAATTCGCAGCCAGGAAACCATGGAGCATG
CATTGGCATTCGCTGAAACCGGGCATTTATGCCTTTCGACATTGCACGCCAATAATGCCAACCAAGCCCTGGATAGAATT
ATCAATTTTTTTCCTGAAGAACGCCGGCCGCAGCTGCTAATGGATTTGTCGCTGAATTTGCAAGCTTTTGTATCCCAGCG
TTTAGTACCCACGGTGGAAGGAAAACGGGTGGCGGCTATTGAAATCCTCCTGGGAACCAAGTTAGTCAGCGATTTGATTC
AAAAGGGCGACGTGCATGCCATCAAGGAGGCCATGGAAAAATCCGAAAATATCGGTATGCAGACTTTCGATAGTCACTTG
CTGAAACTATATAAAAGTGGAGTGATTTCCTTGGAGGAGGCTTTGCGCAATTCCGATTCACCTAACAACTTGAAATTGAA
AATCAATTTAAGCGAGGGTTTAGGCTCTGCGACGGCTGCTAAAGACAAGCCGGCGGGTGACGGCGGCTTGTCGCTGCAGG
CAATCATCAAAGACGAGGACGAAAATGAAGACGAGCACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.118 |
98.705 |
0.544 |
| pilU | Acinetobacter baylyi ADP1 |
53.39 |
91.71 |
0.49 |
| pilU | Vibrio cholerae strain A1552 |
48.87 |
91.71 |
0.448 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.984 |
94.819 |
0.389 |