Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB0A83_RS10880 Genome accession   NZ_CP160405
Coordinates   2416355..2416822 (-) Length   155 a.a.
NCBI ID   WP_150048302.1    Uniprot ID   -
Organism   Methylomonas sp. HYX-M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2411355..2421822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0A83_RS10860 (AB0A83_10860) - 2411907..2414057 (+) 2151 WP_367154124.1 FAD-dependent oxidoreductase -
  AB0A83_RS10865 (AB0A83_10865) - 2414054..2414737 (+) 684 WP_367154125.1 TIGR04283 family arsenosugar biosynthesis glycosyltransferase -
  AB0A83_RS10870 (AB0A83_10870) - 2414739..2415530 (+) 792 WP_367154126.1 sterol desaturase family protein -
  AB0A83_RS10875 (AB0A83_10875) - 2415534..2416169 (+) 636 WP_367154127.1 TIGR04282 family arsenosugar biosynthesis glycosyltransferase -
  AB0A83_RS10880 (AB0A83_10880) ssb 2416355..2416822 (-) 468 WP_150048302.1 single-stranded DNA-binding protein Machinery gene
  AB0A83_RS10885 (AB0A83_10885) - 2416860..2418245 (-) 1386 WP_367154129.1 MFS transporter -
  AB0A83_RS10890 (AB0A83_10890) - 2418546..2418926 (+) 381 WP_150048304.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17406.28 Da        Isoelectric Point: 5.3011

>NTDB_id=1021004 AB0A83_RS10880 WP_150048302.1 2416355..2416822(-) (ssb) [Methylomonas sp. HYX-M1]
MLNKVMLIGRLGADPEVRFMPSGDQITTIRLATSRRWKDRNTGERKEETEWHRVVFFGQTAKVASDYLRKGSQVYVEGRI
RTQKWQGQDGQDRYTTEIVGETMNMLDSRSGGTASYADTAPPPGRDADNRPPASAPMSSQPSPASYDDFDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1021004 AB0A83_RS10880 WP_150048302.1 2416355..2416822(-) (ssb) [Methylomonas sp. HYX-M1]
ATGTTGAACAAAGTCATGCTGATCGGGCGTTTGGGTGCAGACCCTGAAGTACGTTTCATGCCCAGCGGCGATCAGATTAC
CACTATCCGTCTGGCCACCAGTCGGCGCTGGAAAGACCGTAACACCGGAGAGCGCAAGGAAGAGACCGAGTGGCACCGAG
TCGTGTTTTTCGGCCAAACGGCCAAAGTTGCCAGCGACTATCTGCGCAAGGGCAGTCAGGTTTACGTCGAAGGGCGGATT
CGGACGCAGAAGTGGCAGGGGCAAGACGGCCAGGACCGCTACACGACCGAAATCGTTGGCGAGACGATGAATATGTTGGA
CAGCCGTAGCGGCGGGACGGCCAGTTATGCCGACACCGCGCCGCCGCCCGGCCGTGACGCCGATAACCGCCCGCCTGCGT
CTGCGCCTATGTCCTCGCAGCCGTCGCCTGCCAGTTACGACGATTTCGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.542
  ssb Vibrio cholerae strain A1552

48.256

100

0.535
  ssb Neisseria meningitidis MC58

43.353

100

0.484
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.484

Multiple sequence alignment