Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABV589_RS11545 Genome accession   NZ_CP160398
Coordinates   2565519..2566037 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A031FLF5
Organism   Pseudomonas sp. HOU2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2560519..2571037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS11515 (ABV589_11515) - 2560892..2561473 (+) 582 WP_367085905.1 YjfI family protein -
  ABV589_RS11520 (ABV589_11520) - 2561491..2562189 (+) 699 WP_007966153.1 PspA/IM30 family protein -
  ABV589_RS11525 (ABV589_11525) - 2562388..2563035 (+) 648 WP_367085907.1 DUF2491 family protein -
  ABV589_RS11530 (ABV589_11530) - 2563051..2563476 (+) 426 WP_367085908.1 DUF350 domain-containing protein -
  ABV589_RS11535 (ABV589_11535) - 2563494..2564177 (+) 684 WP_367085909.1 DUF1190 domain-containing protein -
  ABV589_RS11540 (ABV589_11540) - 2564180..2565337 (+) 1158 WP_367086192.1 glutathionylspermidine synthase family protein -
  ABV589_RS11545 (ABV589_11545) ssb 2565519..2566037 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  ABV589_RS11550 (ABV589_11550) - 2566047..2567444 (-) 1398 WP_003228711.1 MFS transporter -
  ABV589_RS11555 (ABV589_11555) uvrA 2567635..2570469 (+) 2835 WP_367085911.1 excinuclease ABC subunit UvrA -
  ABV589_RS11560 (ABV589_11560) bfr 2570533..2570997 (-) 465 WP_003228714.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=1020861 ABV589_RS11545 WP_007966163.1 2565519..2566037(-) (ssb) [Pseudomonas sp. HOU2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1020861 ABV589_RS11545 WP_007966163.1 2565519..2566037(-) (ssb) [Pseudomonas sp. HOU2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTATACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAGTTGCTCGGCGGCCGTCCACAACAAGGCGACCAGCAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGTC
AACAGGCTCCGCGTCCGCAGCAGTCGGCTCCGCAACAGCGTCCAGCCCCGGCTCCACAGCAGGCTGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5

Multiple sequence alignment