Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQM60_RS01860 Genome accession   NZ_LS483366
Coordinates   348769..349431 (+) Length   220 a.a.
NCBI ID   WP_111686477.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343769..354431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS01835 (NCTC7366_00369) - 344077..344787 (+) 711 WP_014633927.1 ABC transporter ATP-binding protein -
  DQM60_RS01840 (NCTC7366_00370) - 344922..345581 (+) 660 WP_045771734.1 CBS and ACT domain-containing protein -
  DQM60_RS01845 (NCTC7366_00371) cysK 345760..346686 (-) 927 WP_002883742.1 cysteine synthase A -
  DQM60_RS01850 (NCTC7366_00372) - 346788..347414 (-) 627 WP_045771735.1 YigZ family protein -
  DQM60_RS01855 (NCTC7366_00373) comFA/cflA 347469..348788 (+) 1320 WP_111686476.1 DEAD/DEAH box helicase Machinery gene
  DQM60_RS01860 (NCTC7366_00374) comFC/cflB 348769..349431 (+) 663 WP_111686477.1 ComF family protein Machinery gene
  DQM60_RS01865 (NCTC7366_00375) hpf 349510..350058 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26120.41 Da        Isoelectric Point: 8.6035

>NTDB_id=1020847 DQM60_RS01860 WP_111686477.1 348769..349431(+) (comFC/cflB) [Streptococcus salivarius strain NCTC7366]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYHYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNKLKPFLKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLNQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1020847 DQM60_RS01860 WP_111686477.1 348769..349431(+) (comFC/cflB) [Streptococcus salivarius strain NCTC7366]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCACTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAAGTTAAAACCATTTTTAAAAAAAGGTTATACTATAGTGCCAGTCCCATTATCAGAAGAACGCCTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCGAGGAGCGTCTAAATCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(177-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment