Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB1F75_RS08560 Genome accession   NZ_CP160396
Coordinates   1641111..1642181 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636111..1647181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS08525 (AB1F75_08525) yqgY 1636304..1636549 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  AB1F75_RS08530 (AB1F75_08530) mgsR 1636781..1637161 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  AB1F75_RS08540 (AB1F75_08540) rsbRD 1637385..1638221 (+) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  AB1F75_RS08545 (AB1F75_08545) yqhB 1638274..1639602 (-) 1329 WP_015251711.1 hemolysin family protein -
  AB1F75_RS08550 (AB1F75_08550) corA 1639745..1640698 (+) 954 WP_004399136.1 magnesium transporter CorA -
  AB1F75_RS08555 (AB1F75_08555) - 1640700..1640897 (+) 198 WP_014480259.1 CBS domain-containing protein -
  AB1F75_RS08560 (AB1F75_08560) comGA 1641111..1642181 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  AB1F75_RS08565 (AB1F75_08565) comGB 1642168..1643205 (+) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  AB1F75_RS08570 (AB1F75_08570) comGC 1643219..1643515 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AB1F75_RS08575 (AB1F75_08575) comGD 1643505..1643936 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  AB1F75_RS08580 (AB1F75_08580) comGE 1643920..1644267 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  AB1F75_RS08585 (AB1F75_08585) comGF 1644293..1644676 (+) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  AB1F75_RS08590 (AB1F75_08590) comGG 1644677..1645051 (+) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  AB1F75_RS08595 (AB1F75_08595) spoIITA 1645122..1645302 (+) 181 Protein_1684 YqzE family protein -
  AB1F75_RS08600 (AB1F75_08600) yqzG 1645344..1645670 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  AB1F75_RS08605 (AB1F75_08605) tapA 1645942..1646703 (+) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=1020802 AB1F75_RS08560 WP_004399124.1 1641111..1642181(+) (comGA) [Bacillus subtilis subsp. subtilis strain BSP1]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1020802 AB1F75_RS08560 WP_004399124.1 1641111..1642181(+) (comGA) [Bacillus subtilis subsp. subtilis strain BSP1]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment