Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB1F75_RS00090 Genome accession   NZ_CP160396
Coordinates   16188..16706 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain BSP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 11188..21706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F75_RS00070 (AB1F75_00070) yyzM 12261..12468 (+) 208 Protein_13 DUF951 domain-containing protein -
  AB1F75_RS00075 (AB1F75_00075) yyaE 12519..14522 (+) 2004 WP_044052400.1 molybdopterin-dependent oxidoreductase -
  AB1F75_RS00080 (AB1F75_00080) ychF 14649..15749 (+) 1101 WP_015250781.1 redox-regulated ATPase YchF -
  AB1F75_RS00085 (AB1F75_00085) rpsF 15860..16147 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  AB1F75_RS00090 (AB1F75_00090) ssbA 16188..16706 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB1F75_RS00095 (AB1F75_00095) rpsR 16750..16989 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AB1F75_RS00100 (AB1F75_00100) xth 17055..17813 (+) 759 WP_015250782.1 exodeoxyribonuclease III -
  AB1F75_RS00105 (AB1F75_00105) ccpB 17872..18807 (+) 936 WP_015250783.1 transcriptional regulator CcpB -
  AB1F75_RS00110 (AB1F75_00110) yyaH 18863..19243 (+) 381 WP_015250784.1 VOC family protein -
  AB1F75_RS00115 (AB1F75_00115) maa 19259..19813 (+) 555 WP_015250785.1 sugar O-acetyltransferase -
  AB1F75_RS00120 (AB1F75_00120) yyaJ 19847..21202 (-) 1356 WP_015250786.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1020770 AB1F75_RS00090 WP_003219228.1 16188..16706(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BSP1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1020770 AB1F75_RS00090 WP_003219228.1 16188..16706(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment