Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABUE11_RS17625 Genome accession   NZ_CP160388
Coordinates   3752682..3753224 (+) Length   180 a.a.
NCBI ID   WP_367066752.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3747682..3758224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS17615 uvrA 3748103..3751162 (-) 3060 WP_367066750.1 excinuclease ABC subunit UvrA -
  ABUE11_RS17620 - 3751366..3752544 (+) 1179 WP_367068858.1 MFS transporter -
  ABUE11_RS17625 ssb 3752682..3753224 (+) 543 WP_367066752.1 single-stranded DNA-binding protein Machinery gene
  ABUE11_RS17630 - 3753332..3754993 (-) 1662 WP_367066754.1 L-lactate permease -
  ABUE11_RS17635 mnmA 3755221..3756342 (-) 1122 WP_367066756.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABUE11_RS17640 - 3756423..3756908 (-) 486 WP_367066758.1 NUDIX hydrolase -
  ABUE11_RS17645 - 3757015..3757503 (-) 489 WP_367066760.1 GNAT family N-acetyltransferase -
  ABUE11_RS17650 - 3757500..3758204 (-) 705 WP_367066762.1 riboflavin synthase subunit alpha -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19342.37 Da        Isoelectric Point: 5.9554

>NTDB_id=1020769 ABUE11_RS17625 WP_367066752.1 3752682..3753224(+) (ssb) [Oryzisolibacter sp. LB2S]
MASVNKVILVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGAGGGYDDGGYGDGGGYEAPRRAAPAQRPAPAPVARPAPAP
VAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1020769 ABUE11_RS17625 WP_367066752.1 3752682..3753224(+) (ssb) [Oryzisolibacter sp. LB2S]
ATGGCATCCGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCCGCGACCCCGAAATGCGCACCTTCCCCAGCGGAGACCA
GGTGGCCAACGTGCGCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAAAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTGGAGGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGAGTGGCCAGGAACGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGTGGCCAGGGTGGCGCCGGTGGTGGCTATGACGATGGCGGCTATGGCGATGGCG
GCGGCTACGAGGCCCCGCGCCGCGCAGCGCCCGCCCAGCGCCCCGCGCCCGCCCCTGTTGCCCGCCCGGCTCCGGCCCCG
GTGGCCCAGCCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.439

100

0.561
  ssb Vibrio cholerae strain A1552

51.596

100

0.539
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.45
  ssb Neisseria meningitidis MC58

43.646

100

0.439

Multiple sequence alignment