Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | QRP18_RS14275 | Genome accession | NZ_CP160382 |
| Coordinates | 3081008..3081601 (-) | Length | 197 a.a. |
| NCBI ID | WP_110178237.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain ST110-8 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3076008..3086601
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRP18_RS14255 (QRP18_14255) | aroB | 3076884..3077984 (-) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
| QRP18_RS14260 (QRP18_14260) | aroK | 3078016..3078534 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| QRP18_RS14265 (QRP18_14265) | pilQ | 3078723..3080471 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| QRP18_RS14270 (QRP18_14270) | pilP | 3080503..3081018 (-) | 516 | WP_025554074.1 | pilus assembly protein PilP | Machinery gene |
| QRP18_RS14275 (QRP18_14275) | pilO | 3081008..3081601 (-) | 594 | WP_110178237.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QRP18_RS14280 (QRP18_14280) | pilN | 3081594..3082172 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| QRP18_RS14285 (QRP18_14285) | pilM | 3082156..3083172 (-) | 1017 | WP_140062950.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| QRP18_RS14290 (QRP18_14290) | - | 3083315..3085885 (+) | 2571 | WP_140062951.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23153.70 Da Isoelectric Point: 4.8225
>NTDB_id=1020562 QRP18_RS14275 WP_110178237.1 3081008..3081601(-) (pilO) [Vibrio parahaemolyticus strain ST110-8]
MVNWQDLEMDEIAEWPLLPQLVVICLFVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVVLRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLFVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVVLRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=1020562 QRP18_RS14275 WP_110178237.1 3081008..3081601(-) (pilO) [Vibrio parahaemolyticus strain ST110-8]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGTT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGTATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAATGA
ACTCGGTATCGACAATAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CATTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGTT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGTATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAATGA
ACTCGGTATCGACAATAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CATTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.684 |
96.447 |
0.904 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |