Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | QRP18_RS14270 | Genome accession | NZ_CP160382 |
| Coordinates | 3080503..3081018 (-) | Length | 171 a.a. |
| NCBI ID | WP_025554074.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain ST110-8 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3075503..3086018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRP18_RS14255 (QRP18_14255) | aroB | 3076884..3077984 (-) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
| QRP18_RS14260 (QRP18_14260) | aroK | 3078016..3078534 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| QRP18_RS14265 (QRP18_14265) | pilQ | 3078723..3080471 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| QRP18_RS14270 (QRP18_14270) | pilP | 3080503..3081018 (-) | 516 | WP_025554074.1 | pilus assembly protein PilP | Machinery gene |
| QRP18_RS14275 (QRP18_14275) | pilO | 3081008..3081601 (-) | 594 | WP_110178237.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QRP18_RS14280 (QRP18_14280) | pilN | 3081594..3082172 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| QRP18_RS14285 (QRP18_14285) | pilM | 3082156..3083172 (-) | 1017 | WP_140062950.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| QRP18_RS14290 (QRP18_14290) | - | 3083315..3085885 (+) | 2571 | WP_140062951.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18958.18 Da Isoelectric Point: 10.5314
>NTDB_id=1020561 QRP18_RS14270 WP_025554074.1 3080503..3081018(-) (pilP) [Vibrio parahaemolyticus strain ST110-8]
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=1020561 QRP18_RS14270 WP_025554074.1 3080503..3081018(-) (pilP) [Vibrio parahaemolyticus strain ST110-8]
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGACGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGACGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.211 |
100 |
0.842 |
| pilP | Vibrio cholerae strain A1552 |
58.14 |
100 |
0.585 |