Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAFM42_RS06745 | Genome accession | NZ_CP160329 |
| Coordinates | 1313070..1313597 (-) | Length | 175 a.a. |
| NCBI ID | WP_010467282.1 | Uniprot ID | A0A6L5BQP5 |
| Organism | Pseudomonas fluorescens strain PFX1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1308070..1318597
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFM42_RS06720 (AAFM42_06675) | - | 1308816..1309571 (-) | 756 | WP_053258264.1 | S9 family peptidase | - |
| AAFM42_RS06725 (AAFM42_06680) | - | 1309561..1310670 (-) | 1110 | WP_053258265.1 | DUF3182 family protein | - |
| AAFM42_RS06730 (AAFM42_06685) | - | 1310755..1311318 (+) | 564 | WP_053258266.1 | cysteine hydrolase family protein | - |
| AAFM42_RS06735 (AAFM42_06690) | tam | 1311361..1312122 (-) | 762 | WP_053258267.1 | trans-aconitate 2-methyltransferase | - |
| AAFM42_RS06740 (AAFM42_06695) | - | 1312148..1313056 (+) | 909 | WP_053258268.1 | LysR family transcriptional regulator | - |
| AAFM42_RS06745 (AAFM42_06700) | ssb | 1313070..1313597 (-) | 528 | WP_010467282.1 | single-stranded DNA-binding protein | Machinery gene |
| AAFM42_RS06750 (AAFM42_06705) | - | 1313637..1315031 (-) | 1395 | WP_053258269.1 | MFS transporter | - |
| AAFM42_RS06755 (AAFM42_06710) | uvrA | 1315100..1317934 (+) | 2835 | WP_053258270.1 | excinuclease ABC subunit UvrA | - |
| AAFM42_RS06760 (AAFM42_06715) | bfr | 1317965..1318429 (-) | 465 | WP_053258271.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19396.56 Da Isoelectric Point: 5.9314
>NTDB_id=1020507 AAFM42_RS06745 WP_010467282.1 1313070..1313597(-) (ssb) [Pseudomonas fluorescens strain PFX1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1020507 AAFM42_RS06745 WP_010467282.1 1313070..1313597(-) (ssb) [Pseudomonas fluorescens strain PFX1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCACCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCACCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.065 |
100 |
0.6 |
| ssb | Glaesserella parasuis strain SC1401 |
46.354 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.491 |