Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC631_RS02050 Genome accession   NZ_CP160302
Coordinates   435230..435745 (+) Length   171 a.a.
NCBI ID   WP_045182499.1    Uniprot ID   A0AB39AZG0
Organism   Pseudomonas sp. Hg5Tf     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430230..440745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC631_RS02035 (QC631_002035) bfr 430335..430799 (+) 465 WP_045182494.1 bacterioferritin -
  QC631_RS02040 (QC631_002040) uvrA 430862..433696 (-) 2835 WP_045182495.1 excinuclease ABC subunit UvrA -
  QC631_RS02045 (QC631_002045) - 433826..435220 (+) 1395 WP_045182497.1 MFS transporter -
  QC631_RS02050 (QC631_002050) ssb 435230..435745 (+) 516 WP_045182499.1 single-stranded DNA-binding protein Machinery gene
  QC631_RS02055 (QC631_002055) fdnG 435958..439023 (+) 3066 WP_143527752.1 formate dehydrogenase-N subunit alpha -
  QC631_RS02060 (QC631_002060) fdxH 439023..439973 (+) 951 WP_045182505.1 formate dehydrogenase subunit beta -
  QC631_RS02065 (QC631_002065) - 439970..440623 (+) 654 WP_045182507.1 formate dehydrogenase subunit gamma -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.23 Da        Isoelectric Point: 5.9314

>NTDB_id=1020407 QC631_RS02050 WP_045182499.1 435230..435745(+) (ssb) [Pseudomonas sp. Hg5Tf]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQDGAQQQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1020407 QC631_RS02050 WP_045182499.1 435230..435745(+) (ssb) [Pseudomonas sp. Hg5Tf]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGTCAGGATCCAGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACTGACAAGCAGACTGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGTAAAGGCTCGCAGGTTTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCACAGAACCAGGATGGCGCGCAGCAGCAGGGTGGCAACAACTACAACCAGGCGCCAC
GCCAGCAGGCTCCGCGTCCACAGCAGTCGGCTCCGCAGCAGCGTCCGGCGCCTCAGCAGGCCGCACCGCAGCCAGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.608
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.532
  ssb Neisseria meningitidis MC58

48.864

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.503

Multiple sequence alignment