Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB0R67_RS27290 Genome accession   NZ_CP160237
Coordinates   5349715..5350236 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus thuringiensis strain JJ1216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5344715..5355236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS27270 (AB0R67_27275) rplI 5345925..5346371 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  AB0R67_RS27275 (AB0R67_27280) - 5346368..5348341 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  AB0R67_RS27280 (AB0R67_27285) - 5348420..5349355 (-) 936 WP_098250880.1 YybS family protein -
  AB0R67_RS27285 (AB0R67_27290) rpsR 5349436..5349669 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  AB0R67_RS27290 (AB0R67_27295) ssbA 5349715..5350236 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  AB0R67_RS27295 (AB0R67_27300) rpsF 5350263..5350553 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  AB0R67_RS27300 (AB0R67_27305) ychF 5350745..5351845 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  AB0R67_RS27305 (AB0R67_27310) - 5351961..5352158 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  AB0R67_RS27310 (AB0R67_27315) - 5352179..5353060 (-) 882 WP_000365115.1 mechanosensitive ion channel family protein -
  AB0R67_RS27315 (AB0R67_27320) yyaC 5353320..5353916 (+) 597 WP_001020709.1 spore protease YyaC -
  AB0R67_RS27320 (AB0R67_27325) spo0J 5353937..5354788 (-) 852 WP_078400658.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=1020405 AB0R67_RS27290 WP_002094213.1 5349715..5350236(-) (ssbA) [Bacillus thuringiensis strain JJ1216]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1020405 AB0R67_RS27290 WP_002094213.1 5349715..5350236(-) (ssbA) [Bacillus thuringiensis strain JJ1216]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment