Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB0R86_RS12040 Genome accession   NZ_CP160227
Coordinates   2483944..2485014 (-) Length   356 a.a.
NCBI ID   WP_012117985.1    Uniprot ID   A0A411A7V3
Organism   Bacillus velezensis strain JJ947     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2478944..2490014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R86_RS11990 (AB0R86_11990) sipW 2479004..2479588 (-) 585 WP_007408328.1 signal peptidase I SipW -
  AB0R86_RS11995 (AB0R86_11995) tapA 2479560..2480231 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R86_RS12000 (AB0R86_12000) - 2480490..2480819 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  AB0R86_RS12005 (AB0R86_12005) - 2480859..2481038 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R86_RS12010 (AB0R86_12010) comGG 2481095..2481472 (-) 378 WP_007408325.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R86_RS12015 (AB0R86_12015) comGF 2481473..2481973 (-) 501 WP_258566475.1 competence type IV pilus minor pilin ComGF -
  AB0R86_RS12020 (AB0R86_12020) comGE 2481882..2482196 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  AB0R86_RS12025 (AB0R86_12025) comGD 2482180..2482617 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R86_RS12030 (AB0R86_12030) comGC 2482607..2482915 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R86_RS12035 (AB0R86_12035) comGB 2482920..2483957 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB0R86_RS12040 (AB0R86_12040) comGA 2483944..2485014 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R86_RS12045 (AB0R86_12045) - 2485206..2486156 (-) 951 WP_032870601.1 magnesium transporter CorA family protein -
  AB0R86_RS12050 (AB0R86_12050) - 2486302..2487603 (+) 1302 WP_335395296.1 hemolysin family protein -
  AB0R86_RS12055 (AB0R86_12055) - 2487641..2488471 (-) 831 WP_015240214.1 STAS domain-containing protein -
  AB0R86_RS12065 (AB0R86_12065) - 2488679..2489059 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB0R86_RS12070 (AB0R86_12070) - 2489296..2489541 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.86 Da        Isoelectric Point: 9.4784

>NTDB_id=1020129 AB0R86_RS12040 WP_012117985.1 2483944..2485014(-) (comGA) [Bacillus velezensis strain JJ947]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1020129 AB0R86_RS12040 WP_012117985.1 2483944..2485014(-) (comGA) [Bacillus velezensis strain JJ947]
GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment