Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R86_RS11980 Genome accession   NZ_CP160227
Coordinates   2477771..2478106 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ947     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2472771..2483106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R86_RS11960 (AB0R86_11960) gcvT 2473377..2474477 (-) 1101 WP_042635355.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R86_RS11965 (AB0R86_11965) - 2474901..2476571 (+) 1671 WP_007408331.1 SNF2-related protein -
  AB0R86_RS11970 (AB0R86_11970) - 2476593..2477387 (+) 795 WP_007408330.1 YqhG family protein -
  AB0R86_RS11975 (AB0R86_11975) sinI 2477564..2477737 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R86_RS11980 (AB0R86_11980) sinR 2477771..2478106 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R86_RS11985 (AB0R86_11985) tasA 2478154..2478939 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R86_RS11990 (AB0R86_11990) sipW 2479004..2479588 (-) 585 WP_007408328.1 signal peptidase I SipW -
  AB0R86_RS11995 (AB0R86_11995) tapA 2479560..2480231 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R86_RS12000 (AB0R86_12000) - 2480490..2480819 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  AB0R86_RS12005 (AB0R86_12005) - 2480859..2481038 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R86_RS12010 (AB0R86_12010) comGG 2481095..2481472 (-) 378 WP_007408325.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R86_RS12015 (AB0R86_12015) comGF 2481473..2481973 (-) 501 WP_258566475.1 competence type IV pilus minor pilin ComGF -
  AB0R86_RS12020 (AB0R86_12020) comGE 2481882..2482196 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  AB0R86_RS12025 (AB0R86_12025) comGD 2482180..2482617 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R86_RS12030 (AB0R86_12030) comGC 2482607..2482915 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1020124 AB0R86_RS11980 WP_003153104.1 2477771..2478106(+) (sinR) [Bacillus velezensis strain JJ947]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1020124 AB0R86_RS11980 WP_003153104.1 2477771..2478106(+) (sinR) [Bacillus velezensis strain JJ947]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment