Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R77_RS16585 Genome accession   NZ_CP160226
Coordinates   3188046..3188735 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain JJ1244     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3183046..3193735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS16550 (AB0R77_16550) - 3183124..3183606 (-) 483 WP_024423619.1 flagellar protein FlgN -
  AB0R77_RS16555 (AB0R77_16555) flgM 3183625..3183888 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R77_RS16560 (AB0R77_16560) - 3183968..3184387 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  AB0R77_RS16565 (AB0R77_16565) comFC 3184445..3185101 (-) 657 WP_235362365.1 ComF family protein Machinery gene
  AB0R77_RS16570 (AB0R77_16570) - 3185128..3185421 (-) 294 WP_024423623.1 competence protein ComFB -
  AB0R77_RS16575 (AB0R77_16575) comFA 3185470..3186867 (-) 1398 WP_152649307.1 DEAD/DEAH box helicase Machinery gene
  AB0R77_RS16580 (AB0R77_16580) - 3186988..3187830 (-) 843 WP_024423625.1 DegV family protein -
  AB0R77_RS16585 (AB0R77_16585) degU 3188046..3188735 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R77_RS16590 (AB0R77_16590) degS 3188800..3189975 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R77_RS16595 (AB0R77_16595) - 3190196..3190864 (+) 669 WP_012011434.1 YigZ family protein -
  AB0R77_RS16600 (AB0R77_16600) - 3190849..3191940 (+) 1092 WP_034281103.1 LCP family protein -
  AB0R77_RS16605 (AB0R77_16605) - 3191976..3193043 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1020076 AB0R77_RS16585 WP_008348273.1 3188046..3188735(-) (degU) [Bacillus safensis strain JJ1244]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020076 AB0R77_RS16585 WP_008348273.1 3188046..3188735(-) (degU) [Bacillus safensis strain JJ1244]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment