Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R77_RS16575 Genome accession   NZ_CP160226
Coordinates   3185470..3186867 (-) Length   465 a.a.
NCBI ID   WP_152649307.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3180470..3191867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS16540 (AB0R77_16540) flgL 3180670..3181578 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  AB0R77_RS16545 (AB0R77_16545) flgK 3181588..3183108 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  AB0R77_RS16550 (AB0R77_16550) - 3183124..3183606 (-) 483 WP_024423619.1 flagellar protein FlgN -
  AB0R77_RS16555 (AB0R77_16555) flgM 3183625..3183888 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R77_RS16560 (AB0R77_16560) - 3183968..3184387 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  AB0R77_RS16565 (AB0R77_16565) comFC 3184445..3185101 (-) 657 WP_235362365.1 ComF family protein Machinery gene
  AB0R77_RS16570 (AB0R77_16570) - 3185128..3185421 (-) 294 WP_024423623.1 competence protein ComFB -
  AB0R77_RS16575 (AB0R77_16575) comFA 3185470..3186867 (-) 1398 WP_152649307.1 DEAD/DEAH box helicase Machinery gene
  AB0R77_RS16580 (AB0R77_16580) - 3186988..3187830 (-) 843 WP_024423625.1 DegV family protein -
  AB0R77_RS16585 (AB0R77_16585) degU 3188046..3188735 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R77_RS16590 (AB0R77_16590) degS 3188800..3189975 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R77_RS16595 (AB0R77_16595) - 3190196..3190864 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52911.90 Da        Isoelectric Point: 10.0531

>NTDB_id=1020075 AB0R77_RS16575 WP_152649307.1 3185470..3186867(-) (comFA) [Bacillus safensis strain JJ1244]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGKLSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHKHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=1020075 AB0R77_RS16575 WP_152649307.1 3185470..3186867(-) (comFA) [Bacillus safensis strain JJ1244]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAAAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACAAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
CGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTACG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.412

98.065

0.514

Multiple sequence alignment