Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB0R65_RS11870 Genome accession   NZ_CP160225
Coordinates   2468010..2469080 (-) Length   356 a.a.
NCBI ID   WP_163113647.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1284     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463010..2474080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS11820 (AB0R65_11820) sipW 2463070..2463654 (-) 585 WP_025284996.1 signal peptidase I SipW -
  AB0R65_RS11825 (AB0R65_11825) tapA 2463626..2464297 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R65_RS11830 (AB0R65_11830) - 2464556..2464885 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R65_RS11835 (AB0R65_11835) - 2464925..2465104 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R65_RS11840 (AB0R65_11840) comGG 2465161..2465538 (-) 378 WP_167340753.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R65_RS11845 (AB0R65_11845) comGF 2465539..2466039 (-) 501 WP_257720329.1 competence type IV pilus minor pilin ComGF -
  AB0R65_RS11850 (AB0R65_11850) comGE 2465948..2466262 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R65_RS11855 (AB0R65_11855) comGD 2466246..2466683 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R65_RS11860 (AB0R65_11860) comGC 2466673..2466981 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R65_RS11865 (AB0R65_11865) comGB 2466986..2468023 (-) 1038 WP_015240211.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB0R65_RS11870 (AB0R65_11870) comGA 2468010..2469080 (-) 1071 WP_163113647.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R65_RS11875 (AB0R65_11875) - 2469274..2470224 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  AB0R65_RS11880 (AB0R65_11880) - 2470370..2471671 (+) 1302 WP_021494315.1 hemolysin family protein -
  AB0R65_RS11885 (AB0R65_11885) - 2471709..2472539 (-) 831 WP_015240214.1 STAS domain-containing protein -
  AB0R65_RS11895 (AB0R65_11895) - 2472746..2473126 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB0R65_RS11900 (AB0R65_11900) - 2473363..2473608 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40515.82 Da        Isoelectric Point: 9.4729

>NTDB_id=1019992 AB0R65_RS11870 WP_163113647.1 2468010..2469080(-) (comGA) [Bacillus velezensis strain JJ1284]
MKNIETYSRNIINEAYTARASDVHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1019992 AB0R65_RS11870 WP_163113647.1 2468010..2469080(-) (comGA) [Bacillus velezensis strain JJ1284]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATGTACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGGCACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

81.742

100

0.817
  pilB Glaesserella parasuis strain SC1401

38.506

97.753

0.376
  pilF Thermus thermophilus HB27

37.607

98.596

0.371

Multiple sequence alignment