Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R65_RS11810 Genome accession   NZ_CP160225
Coordinates   2461837..2462172 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1284     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2456837..2467172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS11790 (AB0R65_11790) gcvT 2457443..2458543 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R65_RS11795 (AB0R65_11795) - 2458967..2460637 (+) 1671 WP_108655005.1 SNF2-related protein -
  AB0R65_RS11800 (AB0R65_11800) - 2460659..2461453 (+) 795 WP_015240204.1 YqhG family protein -
  AB0R65_RS11805 (AB0R65_11805) sinI 2461630..2461803 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R65_RS11810 (AB0R65_11810) sinR 2461837..2462172 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R65_RS11815 (AB0R65_11815) tasA 2462220..2463005 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R65_RS11820 (AB0R65_11820) sipW 2463070..2463654 (-) 585 WP_025284996.1 signal peptidase I SipW -
  AB0R65_RS11825 (AB0R65_11825) tapA 2463626..2464297 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R65_RS11830 (AB0R65_11830) - 2464556..2464885 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R65_RS11835 (AB0R65_11835) - 2464925..2465104 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R65_RS11840 (AB0R65_11840) comGG 2465161..2465538 (-) 378 WP_167340753.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R65_RS11845 (AB0R65_11845) comGF 2465539..2466039 (-) 501 WP_257720329.1 competence type IV pilus minor pilin ComGF -
  AB0R65_RS11850 (AB0R65_11850) comGE 2465948..2466262 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R65_RS11855 (AB0R65_11855) comGD 2466246..2466683 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R65_RS11860 (AB0R65_11860) comGC 2466673..2466981 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019987 AB0R65_RS11810 WP_003153104.1 2461837..2462172(+) (sinR) [Bacillus velezensis strain JJ1284]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019987 AB0R65_RS11810 WP_003153104.1 2461837..2462172(+) (sinR) [Bacillus velezensis strain JJ1284]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment