Detailed information NTG0101992

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: BAMY6614_RS15990
• Genome accession: NZ_CP006960
• Coordinates: 3362403..3363098 (-)
• Length: 231 a.a.
• NCBI ID: WP_061862440.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3357403..3368098

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS15960 (BAMY6614_16865)	-	3357418..3358221 (-)	804	WP_014418545.1	M23 family metallopeptidase	-
BAMY6614_RS15965 (BAMY6614_16870)	minD	3358349..3359152 (-)	804	WP_003152655.1	septum site-determining protein MinD	-
BAMY6614_RS15970 (BAMY6614_16875)	minC	3359155..3359835 (-)	681	WP_003152653.1	septum site-determining protein MinC	-
BAMY6614_RS15975 (BAMY6614_16880)	mreD	3359889..3360407 (-)	519	WP_007408167.1	rod shape-determining protein MreD	-
BAMY6614_RS15980 (BAMY6614_16885)	mreC	3360404..3361267 (-)	864	WP_007408166.1	rod shape-determining protein MreC	-
BAMY6614_RS15985 (BAMY6614_16890)	mreB	3361298..3362311 (-)	1014	WP_003152647.1	cell shape-determining protein MreB	-
BAMY6614_RS15990 (BAMY6614_16895)	ysxA/radC	3362403..3363098 (-)	696	WP_061862440.1	RadC family protein	Machinery gene
BAMY6614_RS15995 (BAMY6614_16900)	-	3363130..3363699 (-)	570	WP_061862441.1	Maf family protein	-
BAMY6614_RS16000 (BAMY6614_16905)	-	3363840..3364841 (-)	1002	WP_014418547.1	SPOR domain-containing protein	-
BAMY6614_RS16005 (BAMY6614_16910)	comC	3364968..3365720 (-)	753	WP_014418548.1	prepilin peptidase	Machinery gene
BAMY6614_RS16010 (BAMY6614_16915)	-	3365860..3367152 (-)	1293	WP_014418549.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 231 a.a.
• Molecular weight: 26066.27 Da
• Isoelectric Point: 9.1909

>NTDB_id=101992 BAMY6614_RS15990 WP_061862440.1 3362403..3363098(-) (ysxA/radC) [Bacillus amyloliquefaciens UMAF6614]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGDHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

• Length: 696 bp

>NTDB_id=101992 BAMY6614_RS15990 WP_061862440.1 3362403..3363098(-) (ysxA/radC) [Bacillus amyloliquefaciens UMAF6614]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGATCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (11-87)

• RadC-like JAB domain (RadC) (110-229)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.446	100	0.874
radC	Streptococcus pneumoniae TIGR4	49.048	90.909	0.446
radC	Streptococcus pneumoniae R6	48.571	90.909	0.442
radC	Streptococcus pneumoniae D39	48.571	90.909	0.442
radC	Streptococcus gordonii str. Challis substr. CH1	46.667	90.909	0.424