Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB0R82_RS20930 Genome accession   NZ_CP160220
Coordinates   4058830..4059348 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain JM553     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4053830..4064348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS20900 (AB0R82_20900) yyaJ 4054333..4055688 (+) 1356 WP_048654832.1 MFS transporter -
  AB0R82_RS20905 (AB0R82_20905) maa 4055722..4056276 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  AB0R82_RS20910 (AB0R82_20910) yyaH 4056294..4056674 (-) 381 WP_048654831.1 VOC family protein -
  AB0R82_RS20915 (AB0R82_20915) ccpB 4056730..4057665 (-) 936 WP_153912460.1 transcriptional regulator CcpB -
  AB0R82_RS20920 (AB0R82_20920) xth 4057724..4058482 (-) 759 WP_038429969.1 exodeoxyribonuclease III -
  AB0R82_RS20925 (AB0R82_20925) rpsR 4058547..4058786 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  AB0R82_RS20930 (AB0R82_20930) ssbA 4058830..4059348 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB0R82_RS20935 (AB0R82_20935) rpsF 4059389..4059676 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  AB0R82_RS20940 (AB0R82_20940) ychF 4059787..4060887 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  AB0R82_RS20945 (AB0R82_20945) yyaE 4061014..4063017 (-) 2004 WP_198878346.1 molybdopterin-dependent oxidoreductase -
  AB0R82_RS20950 (AB0R82_20950) yyzM 4063068..4063274 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=1019733 AB0R82_RS20930 WP_003219228.1 4058830..4059348(-) (ssbA) [Bacillus subtilis strain JM553]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1019733 AB0R82_RS20930 WP_003219228.1 4058830..4059348(-) (ssbA) [Bacillus subtilis strain JM553]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAACCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment