Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R89_RS16935 Genome accession   NZ_CP160218
Coordinates   3487403..3488092 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain AP45     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482403..3493092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS16900 (AB0R89_16900) - 3482600..3483082 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R89_RS16905 (AB0R89_16905) flgM 3483097..3483363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R89_RS16910 (AB0R89_16910) - 3483433..3483852 (-) 420 WP_043020594.1 TIGR03826 family flagellar region protein -
  AB0R89_RS16915 (AB0R89_16915) comFC 3483926..3484615 (-) 690 WP_235611321.1 phosphoribosyltransferase family protein Machinery gene
  AB0R89_RS16920 (AB0R89_16920) - 3484621..3484905 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R89_RS16925 (AB0R89_16925) comFA 3484963..3486348 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  AB0R89_RS16930 (AB0R89_16930) - 3486457..3487305 (-) 849 WP_003151387.1 DegV family protein -
  AB0R89_RS16935 (AB0R89_16935) degU 3487403..3488092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R89_RS16940 (AB0R89_16940) degS 3488169..3489332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R89_RS16945 (AB0R89_16945) - 3489555..3490202 (+) 648 WP_007407485.1 YigZ family protein -
  AB0R89_RS16950 (AB0R89_16950) - 3490207..3491466 (+) 1260 WP_043020591.1 LCP family protein -
  AB0R89_RS16955 (AB0R89_16955) - 3491565..3492641 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1019569 AB0R89_RS16935 WP_003219701.1 3487403..3488092(-) (degU) [Bacillus velezensis strain AP45]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019569 AB0R89_RS16935 WP_003219701.1 3487403..3488092(-) (degU) [Bacillus velezensis strain AP45]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment