Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB0R89_RS16925 Genome accession   NZ_CP160218
Coordinates   3484963..3486348 (-) Length   461 a.a.
NCBI ID   WP_043020592.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479963..3491348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS16890 (AB0R89_16890) flgL 3480138..3481055 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AB0R89_RS16895 (AB0R89_16895) flgK 3481067..3482584 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  AB0R89_RS16900 (AB0R89_16900) - 3482600..3483082 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R89_RS16905 (AB0R89_16905) flgM 3483097..3483363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R89_RS16910 (AB0R89_16910) - 3483433..3483852 (-) 420 WP_043020594.1 TIGR03826 family flagellar region protein -
  AB0R89_RS16915 (AB0R89_16915) comFC 3483926..3484615 (-) 690 WP_235611321.1 phosphoribosyltransferase family protein Machinery gene
  AB0R89_RS16920 (AB0R89_16920) - 3484621..3484905 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R89_RS16925 (AB0R89_16925) comFA 3484963..3486348 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  AB0R89_RS16930 (AB0R89_16930) - 3486457..3487305 (-) 849 WP_003151387.1 DegV family protein -
  AB0R89_RS16935 (AB0R89_16935) degU 3487403..3488092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R89_RS16940 (AB0R89_16940) degS 3488169..3489332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AB0R89_RS16945 (AB0R89_16945) - 3489555..3490202 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52662.99 Da        Isoelectric Point: 10.2276

>NTDB_id=1019568 AB0R89_RS16925 WP_043020592.1 3484963..3486348(-) (comFA) [Bacillus velezensis strain AP45]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1019568 AB0R89_RS16925 WP_043020592.1 3484963..3486348(-) (comFA) [Bacillus velezensis strain AP45]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTACTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment