Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R89_RS16915 Genome accession   NZ_CP160218
Coordinates   3483926..3484615 (-) Length   229 a.a.
NCBI ID   WP_235611321.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478926..3489615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS16880 (AB0R89_16880) fliW 3479017..3479448 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AB0R89_RS16885 (AB0R89_16885) - 3479478..3480047 (-) 570 WP_043020595.1 DUF6470 family protein -
  AB0R89_RS16890 (AB0R89_16890) flgL 3480138..3481055 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AB0R89_RS16895 (AB0R89_16895) flgK 3481067..3482584 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  AB0R89_RS16900 (AB0R89_16900) - 3482600..3483082 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R89_RS16905 (AB0R89_16905) flgM 3483097..3483363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R89_RS16910 (AB0R89_16910) - 3483433..3483852 (-) 420 WP_043020594.1 TIGR03826 family flagellar region protein -
  AB0R89_RS16915 (AB0R89_16915) comFC 3483926..3484615 (-) 690 WP_235611321.1 phosphoribosyltransferase family protein Machinery gene
  AB0R89_RS16920 (AB0R89_16920) - 3484621..3484905 (-) 285 WP_007407481.1 competence protein ComFB -
  AB0R89_RS16925 (AB0R89_16925) comFA 3484963..3486348 (-) 1386 WP_043020592.1 DEAD/DEAH box helicase Machinery gene
  AB0R89_RS16930 (AB0R89_16930) - 3486457..3487305 (-) 849 WP_003151387.1 DegV family protein -
  AB0R89_RS16935 (AB0R89_16935) degU 3487403..3488092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R89_RS16940 (AB0R89_16940) degS 3488169..3489332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25281.90 Da        Isoelectric Point: 8.0779

>NTDB_id=1019567 AB0R89_RS16915 WP_235611321.1 3483926..3484615(-) (comFC) [Bacillus velezensis strain AP45]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019567 AB0R89_RS16915 WP_235611321.1 3483926..3484615(-) (comFC) [Bacillus velezensis strain AP45]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment