Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R89_RS11875 Genome accession   NZ_CP160218
Coordinates   2531630..2531965 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2526630..2536965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS11855 (AB0R89_11855) gcvT 2527236..2528336 (-) 1101 WP_043020790.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R89_RS11860 (AB0R89_11860) - 2528760..2530430 (+) 1671 WP_043020789.1 SNF2-related protein -
  AB0R89_RS11865 (AB0R89_11865) - 2530452..2531246 (+) 795 WP_007612541.1 YqhG family protein -
  AB0R89_RS11870 (AB0R89_11870) sinI 2531423..2531596 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R89_RS11875 (AB0R89_11875) sinR 2531630..2531965 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R89_RS11880 (AB0R89_11880) tasA 2532013..2532798 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R89_RS11885 (AB0R89_11885) sipW 2532863..2533447 (-) 585 WP_015240205.1 signal peptidase I SipW -
  AB0R89_RS11890 (AB0R89_11890) tapA 2533419..2534090 (-) 672 WP_020956077.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R89_RS11895 (AB0R89_11895) - 2534349..2534678 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R89_RS11900 (AB0R89_11900) - 2534719..2534898 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R89_RS11905 (AB0R89_11905) comGG 2534955..2535332 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R89_RS11910 (AB0R89_11910) comGF 2535333..2535833 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  AB0R89_RS11915 (AB0R89_11915) comGE 2535742..2536056 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R89_RS11920 (AB0R89_11920) comGD 2536040..2536477 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R89_RS11925 (AB0R89_11925) comGC 2536467..2536775 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019545 AB0R89_RS11875 WP_003153104.1 2531630..2531965(+) (sinR) [Bacillus velezensis strain AP45]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019545 AB0R89_RS11875 WP_003153104.1 2531630..2531965(+) (sinR) [Bacillus velezensis strain AP45]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment