Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB0R81_RS12035 Genome accession   NZ_CP160215
Coordinates   2491472..2491780 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ213     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486472..2496780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS11985 (AB0R81_11985) sinR 2486636..2486971 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R81_RS11990 (AB0R81_11990) tasA 2487019..2487804 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R81_RS11995 (AB0R81_11995) sipW 2487869..2488453 (-) 585 WP_007408328.1 signal peptidase I SipW -
  AB0R81_RS12000 (AB0R81_12000) tapA 2488425..2489096 (-) 672 WP_042635356.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R81_RS12005 (AB0R81_12005) - 2489355..2489684 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  AB0R81_RS12010 (AB0R81_12010) - 2489724..2489903 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R81_RS12015 (AB0R81_12015) comGG 2489960..2490337 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R81_RS12020 (AB0R81_12020) comGF 2490338..2490838 (-) 501 WP_262982688.1 competence type IV pilus minor pilin ComGF -
  AB0R81_RS12025 (AB0R81_12025) comGE 2490747..2491061 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  AB0R81_RS12030 (AB0R81_12030) comGD 2491045..2491482 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R81_RS12035 (AB0R81_12035) comGC 2491472..2491780 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R81_RS12040 (AB0R81_12040) comGB 2491785..2492822 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB0R81_RS12045 (AB0R81_12045) comGA 2492809..2493879 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R81_RS12050 (AB0R81_12050) - 2494071..2495021 (-) 951 WP_032870601.1 magnesium transporter CorA family protein -
  AB0R81_RS12055 (AB0R81_12055) - 2495167..2496468 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=1019320 AB0R81_RS12035 WP_003153087.1 2491472..2491780(-) (comGC) [Bacillus velezensis strain JJ213]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=1019320 AB0R81_RS12035 WP_003153087.1 2491472..2491780(-) (comGC) [Bacillus velezensis strain JJ213]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment