Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R81_RS11985 Genome accession   NZ_CP160215
Coordinates   2486636..2486971 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ213     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2481636..2491971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS11965 (AB0R81_11965) gcvT 2482242..2483342 (-) 1101 WP_042635355.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R81_RS11970 (AB0R81_11970) - 2483766..2485436 (+) 1671 WP_031378948.1 SNF2-related protein -
  AB0R81_RS11975 (AB0R81_11975) - 2485458..2486252 (+) 795 WP_007408330.1 YqhG family protein -
  AB0R81_RS11980 (AB0R81_11980) sinI 2486429..2486602 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AB0R81_RS11985 (AB0R81_11985) sinR 2486636..2486971 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AB0R81_RS11990 (AB0R81_11990) tasA 2487019..2487804 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  AB0R81_RS11995 (AB0R81_11995) sipW 2487869..2488453 (-) 585 WP_007408328.1 signal peptidase I SipW -
  AB0R81_RS12000 (AB0R81_12000) tapA 2488425..2489096 (-) 672 WP_042635356.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R81_RS12005 (AB0R81_12005) - 2489355..2489684 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  AB0R81_RS12010 (AB0R81_12010) - 2489724..2489903 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R81_RS12015 (AB0R81_12015) comGG 2489960..2490337 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R81_RS12020 (AB0R81_12020) comGF 2490338..2490838 (-) 501 WP_262982688.1 competence type IV pilus minor pilin ComGF -
  AB0R81_RS12025 (AB0R81_12025) comGE 2490747..2491061 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  AB0R81_RS12030 (AB0R81_12030) comGD 2491045..2491482 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R81_RS12035 (AB0R81_12035) comGC 2491472..2491780 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1019317 AB0R81_RS11985 WP_003153104.1 2486636..2486971(+) (sinR) [Bacillus velezensis strain JJ213]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1019317 AB0R81_RS11985 WP_003153104.1 2486636..2486971(+) (sinR) [Bacillus velezensis strain JJ213]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment