Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R80_RS17825 Genome accession   NZ_CP160213
Coordinates   3599609..3600298 (-) Length   229 a.a.
NCBI ID   WP_327934932.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM199     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594609..3605298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R80_RS17790 (AB0R80_17790) fliW 3594700..3595131 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AB0R80_RS17795 (AB0R80_17795) - 3595161..3595730 (-) 570 WP_007407476.1 DUF6470 family protein -
  AB0R80_RS17800 (AB0R80_17800) flgL 3595821..3596738 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  AB0R80_RS17805 (AB0R80_17805) flgK 3596750..3598267 (-) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  AB0R80_RS17810 (AB0R80_17810) - 3598283..3598765 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AB0R80_RS17815 (AB0R80_17815) flgM 3598780..3599046 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R80_RS17820 (AB0R80_17820) - 3599116..3599535 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AB0R80_RS17825 (AB0R80_17825) comFC 3599609..3600298 (-) 690 WP_327934932.1 phosphoribosyltransferase family protein Machinery gene
  AB0R80_RS17830 (AB0R80_17830) - 3600304..3600588 (-) 285 WP_003151389.1 competence protein ComFB -
  AB0R80_RS17835 (AB0R80_17835) comFA 3600646..3602031 (-) 1386 WP_327934846.1 DEAD/DEAH box helicase Machinery gene
  AB0R80_RS17840 (AB0R80_17840) - 3602138..3602986 (-) 849 WP_327934847.1 DegV family protein -
  AB0R80_RS17845 (AB0R80_17845) degU 3603084..3603773 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R80_RS17850 (AB0R80_17850) degS 3603850..3605013 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25289.93 Da        Isoelectric Point: 8.0779

>NTDB_id=1019190 AB0R80_RS17825 WP_327934932.1 3599609..3600298(-) (comFC) [Bacillus velezensis strain JM199]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019190 AB0R80_RS17825 WP_327934932.1 3599609..3600298(-) (comFC) [Bacillus velezensis strain JM199]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment