Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB0R79_RS13055 Genome accession   NZ_CP160211
Coordinates   2653338..2654408 (-) Length   356 a.a.
NCBI ID   WP_012117985.1    Uniprot ID   A0A411A7V3
Organism   Bacillus velezensis strain JM236     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2648338..2659408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS13005 (AB0R79_13005) sipW 2648398..2648982 (-) 585 WP_025284996.1 signal peptidase I SipW -
  AB0R79_RS13010 (AB0R79_13010) tapA 2648954..2649625 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R79_RS13015 (AB0R79_13015) - 2649884..2650213 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AB0R79_RS13020 (AB0R79_13020) - 2650253..2650432 (-) 180 WP_003153093.1 YqzE family protein -
  AB0R79_RS13025 (AB0R79_13025) comGG 2650489..2650866 (-) 378 WP_167340753.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB0R79_RS13030 (AB0R79_13030) comGF 2650867..2651367 (-) 501 WP_257720329.1 competence type IV pilus minor pilin ComGF -
  AB0R79_RS13035 (AB0R79_13035) comGE 2651276..2651590 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AB0R79_RS13040 (AB0R79_13040) comGD 2651574..2652011 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB0R79_RS13045 (AB0R79_13045) comGC 2652001..2652309 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AB0R79_RS13050 (AB0R79_13050) comGB 2652314..2653351 (-) 1038 WP_015240211.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB0R79_RS13055 (AB0R79_13055) comGA 2653338..2654408 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  AB0R79_RS13060 (AB0R79_13060) - 2654600..2655550 (-) 951 WP_032870601.1 magnesium transporter CorA family protein -
  AB0R79_RS13065 (AB0R79_13065) - 2655696..2657000 (+) 1305 WP_326207138.1 hemolysin family protein -
  AB0R79_RS13070 (AB0R79_13070) - 2657038..2657868 (-) 831 WP_015240214.1 STAS domain-containing protein -
  AB0R79_RS13080 (AB0R79_13080) - 2658075..2658455 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB0R79_RS13085 (AB0R79_13085) - 2658692..2658937 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.86 Da        Isoelectric Point: 9.4784

>NTDB_id=1019020 AB0R79_RS13055 WP_012117985.1 2653338..2654408(-) (comGA) [Bacillus velezensis strain JM236]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1019020 AB0R79_RS13055 WP_012117985.1 2653338..2654408(-) (comGA) [Bacillus velezensis strain JM236]
GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAATTGTCCTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment