Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   AB0R79_RS01770 Genome accession   NZ_CP160211
Coordinates   329999..330397 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain JM236     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 324999..335397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R79_RS01745 (AB0R79_01745) - 325170..326372 (+) 1203 WP_012116765.1 GTP-binding protein -
  AB0R79_RS01750 (AB0R79_01750) - 326437..327573 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  AB0R79_RS01755 (AB0R79_01755) - 327588..328022 (+) 435 WP_167340471.1 RDD family protein -
  AB0R79_RS01760 (AB0R79_01760) - 328095..328418 (+) 324 WP_007409357.1 YckD family protein -
  AB0R79_RS01765 (AB0R79_01765) - 328522..329958 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  AB0R79_RS01770 (AB0R79_01770) nin/comJ 329999..330397 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  AB0R79_RS01775 (AB0R79_01775) nucA/comI 330418..330855 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB0R79_RS01780 (AB0R79_01780) hxlB 331213..331770 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  AB0R79_RS01785 (AB0R79_01785) hxlA 331767..332402 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  AB0R79_RS01790 (AB0R79_01790) - 332634..332996 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=1018980 AB0R79_RS01770 WP_007609299.1 329999..330397(-) (nin/comJ) [Bacillus velezensis strain JM236]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1018980 AB0R79_RS01770 WP_007609299.1 329999..330397(-) (nin/comJ) [Bacillus velezensis strain JM236]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCAAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment