Detailed information NTG1018894

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX013_RS08895
• Genome accession: NZ_CP160207
• Coordinates: 2029216..2029674 (-)
• Length: 152 a.a.
• NCBI ID: WP_084585929.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2024216..2034674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX013_RS08885 (ABX013_01360)	waaA	2026229..2027518 (+)	1290	WP_371751507.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
ABX013_RS08890 (ABX013_18725)	-	2027703..2028692 (-)	990	WP_371751508.1	sulfatase-like hydrolase/transferase	-
ABX013_RS08895 (ABX013_18730)	pilA	2029216..2029674 (-)	459	WP_084585929.1	pilin	Machinery gene
ABX013_RS08900 (ABX013_18735)	-	2029824..2030285 (-)	462	WP_371751509.1	pilin	-
ABX013_RS08905 (ABX013_18740)	-	2030436..2030885 (-)	450	WP_084585931.1	pilin	-
ABX013_RS08910 (ABX013_18745)	-	2031167..2031970 (-)	804	WP_371751510.1	hypothetical protein	-
ABX013_RS08915 (ABX013_18750)	-	2032542..2033258 (+)	717	WP_371751892.1	TonB-dependent receptor plug domain-containing protein	-
ABX013_RS08920 (ABX013_01300)	-	2033340..2033564 (+)	225	WP_370580384.1	hypothetical protein	-
ABX013_RS08925 (ABX013_18755)	-	2033597..2034070 (+)	474	WP_371751511.1	TonB-dependent receptor domain-containing protein	-
ABX013_RS08930 (ABX013_01290)	-	2033991..2034485 (+)	495	WP_371751512.1	TonB-dependent receptor domain-containing protein	-

Sequence

Protein

• Length: 152 a.a.
• Molecular weight: 15643.00 Da
• Isoelectric Point: 9.6428

>NTDB_id=1018894 ABX013_RS08895 WP_084585929.1 2029216..2029674(-) (pilA) [Snodgrassella alvi strain Amel04]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNNNCKSGPNNTVDNAIDKQTG
KYGVAEIGGTAATGSISANGATGCTITYTVNGQKVSASIAGKTLILDVLKNGSLKKNGGTMPDKYVPKAFTI

Nucleotide

• Length: 459 bp

>NTDB_id=1018894 ABX013_RS08895 WP_084585929.1 2029216..2029674(-) (pilA) [Snodgrassella alvi strain Amel04]
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATTGTAATTGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCCAGTCTGGCTGCTGGTCTGAAAACTCAGA
TTATTGATAACTTGCAGAATAATAATTGTAAGTCAGGTCCCAATAATACAGTTGATAACGCCATTGATAAGCAGACTGGT
AAATACGGTGTGGCAGAAATCGGTGGTACTGCCGCTACCGGCAGTATTTCTGCTAACGGTGCAACAGGCTGTACAATTAC
ATATACAGTAAACGGTCAAAAAGTATCTGCTTCTATTGCTGGTAAGACTTTGATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATGGTGGGACTATGCCTGATAAATATGTACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-149)

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter nosocomialis M2	53.741	96.711	0.52
pilA2	Legionella pneumophila strain ERS1305867	40.541	97.368	0.395
pilA	Pseudomonas aeruginosa PAK	39.474	100	0.395
pilA2	Legionella pneumophila str. Paris	40.136	96.711	0.388