Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQL04_RS00680 Genome accession   NZ_LS483340
Coordinates   104125..104553 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12062     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99125..109553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS00660 (NCTC12062_00134) - 101455..101820 (+) 366 WP_002986560.1 DUF1033 family protein -
  DQL04_RS00665 (NCTC12062_00135) comGA 101913..102851 (+) 939 WP_047235612.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL04_RS00670 (NCTC12062_00136) comGB 102787..103822 (+) 1036 Protein_81 competence type IV pilus assembly protein ComGB -
  DQL04_RS00675 (NCTC12062_00137) comGC 103824..104150 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL04_RS00680 (NCTC12062_00138) comGD 104125..104553 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL04_RS00685 (NCTC12062_00139) comGE 104510..104794 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQL04_RS00690 (NCTC12062_00140) comGF 104787..105221 (+) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL04_RS00695 (NCTC12062_00141) comGG 105205..105531 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  DQL04_RS00700 (NCTC12062_00142) comGH 105629..106582 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  DQL04_RS00705 (NCTC12062_00143) - 106641..107837 (+) 1197 WP_011284424.1 acetate kinase -
  DQL04_RS00710 - 108024..108332 (+) 309 WP_011284425.1 hypothetical protein -
  DQL04_RS00715 (NCTC12062_00144) proC 108415..109185 (-) 771 WP_032464773.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=1018638 DQL04_RS00680 WP_002986548.1 104125..104553(+) (comGD) [Streptococcus pyogenes strain NCTC12062]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1018638 DQL04_RS00680 WP_002986548.1 104125..104553(+) (comGD) [Streptococcus pyogenes strain NCTC12062]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366