Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL34_RS02235 Genome accession   NZ_LS483339
Coordinates   413807..414469 (+) Length   220 a.a.
NCBI ID   WP_100262556.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408807..419469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS02210 (NCTC12958_00465) - 409124..409834 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  DQL34_RS02215 - 409970..410632 (+) 663 Protein_390 CBS and ACT domain-containing protein -
  DQL34_RS02220 (NCTC12958_00468) cysK 410798..411724 (-) 927 WP_014621180.1 cysteine synthase A -
  DQL34_RS02225 (NCTC12958_00469) - 411826..412452 (-) 627 WP_011680769.1 YigZ family protein -
  DQL34_RS02230 (NCTC12958_00470) comFA/cflA 412507..413826 (+) 1320 WP_084828509.1 DEAD/DEAH box helicase Machinery gene
  DQL34_RS02235 (NCTC12958_00471) comFC/cflB 413807..414469 (+) 663 WP_100262556.1 ComF family protein Machinery gene
  DQL34_RS02240 (NCTC12958_00472) hpf 414548..415096 (+) 549 WP_084828511.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26080.41 Da        Isoelectric Point: 8.9833

>NTDB_id=1018542 DQL34_RS02235 WP_100262556.1 413807..414469(+) (comFC/cflB) [Streptococcus thermophilus strain NCTC12958]
MKCLLCNEWIEPVDQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1018542 DQL34_RS02235 WP_100262556.1 413807..414469(+) (comFC/cflB) [Streptococcus thermophilus strain NCTC12958]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGATCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441