Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQL34_RS00420 Genome accession   NZ_LS483339
Coordinates   70013..70603 (+) Length   196 a.a.
NCBI ID   WP_111679083.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65013..75603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS00395 (NCTC12958_00083) - 66141..66596 (-) 456 WP_084825708.1 DUF3021 domain-containing protein -
  DQL34_RS00400 (NCTC12958_00084) brsR 66593..67030 (-) 438 WP_111679081.1 LytTR family DNA-binding domain-containing protein Regulator
  DQL34_RS00405 (NCTC12958_00085) - 67209..67514 (+) 306 WP_084830425.1 hypothetical protein -
  DQL34_RS00410 (NCTC12958_00086) hexB 67566..69509 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQL34_RS00415 (NCTC12958_00087) - 69640..69861 (+) 222 WP_011680602.1 hypothetical protein -
  DQL34_RS00420 (NCTC12958_00088) ruvA 70013..70603 (+) 591 WP_111679083.1 Holliday junction branch migration protein RuvA Machinery gene
  DQL34_RS00425 (NCTC12958_00089) - 70610..71164 (+) 555 WP_111679085.1 DNA-3-methyladenine glycosylase I -
  DQL34_RS00430 (NCTC12958_00090) cinA 71260..72531 (+) 1272 WP_111679087.1 competence/damage-inducible protein A Machinery gene
  DQL34_RS00435 (NCTC12958_00091) recA 72567..73706 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  DQL34_RS00440 (NCTC12958_00092) spx 73883..74281 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21714.01 Da        Isoelectric Point: 5.2834

>NTDB_id=1018522 DQL34_RS00420 WP_111679083.1 70013..70603(+) (ruvA) [Streptococcus thermophilus strain NCTC12958]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKTFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1018522 DQL34_RS00420 WP_111679083.1 70013..70603(+) (ruvA) [Streptococcus thermophilus strain NCTC12958]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAACCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444