Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | N900_RS05145 | Genome accession | NZ_CP006947 |
| Coordinates | 1098069..1099073 (+) | Length | 334 a.a. |
| NCBI ID | WP_000568491.1 | Uniprot ID | Q9KR02 |
| Organism | Vibrio cholerae O1 str. KW3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1093069..1104073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N900_RS05120 (N900_05105) | lpxH | 1093893..1094633 (-) | 741 | WP_000557000.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
| N900_RS05125 (N900_05110) | - | 1094674..1095168 (-) | 495 | WP_000631302.1 | peptidylprolyl isomerase | - |
| N900_RS05130 (N900_05115) | cysS | 1095314..1096693 (+) | 1380 | WP_000913180.1 | cysteine--tRNA ligase | - |
| N900_RS05135 (N900_05120) | ruvC | 1096781..1097302 (+) | 522 | WP_000111361.1 | crossover junction endodeoxyribonuclease RuvC | - |
| N900_RS05140 (N900_05125) | ruvA | 1097399..1098013 (+) | 615 | WP_000580359.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| N900_RS05145 (N900_05130) | ruvB | 1098069..1099073 (+) | 1005 | WP_000568491.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| N900_RS05150 (N900_05135) | cydA | 1099532..1101118 (+) | 1587 | WP_000568056.1 | cytochrome ubiquinol oxidase subunit I | - |
| N900_RS05155 (N900_05140) | cydB | 1101136..1102272 (+) | 1137 | WP_000460767.1 | cytochrome d ubiquinol oxidase subunit II | - |
| N900_RS05160 (N900_05145) | cydX | 1102285..1102392 (+) | 108 | WP_000270285.1 | cytochrome bd-I oxidase subunit CydX | - |
| N900_RS05165 (N900_05150) | ybgE | 1102385..1102702 (+) | 318 | WP_001286617.1 | cyd operon protein YbgE | - |
| N900_RS05170 (N900_05155) | ybgC | 1102871..1103278 (+) | 408 | WP_001091290.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| N900_RS05175 (N900_05160) | tolQ | 1103268..1103951 (+) | 684 | WP_000123084.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37298.75 Da Isoelectric Point: 5.0460
>NTDB_id=101813 N900_RS05145 WP_000568491.1 1098069..1099073(+) (ruvB) [Vibrio cholerae O1 str. KW3]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=101813 N900_RS05145 WP_000568491.1 1098069..1099073(+) (ruvB) [Vibrio cholerae O1 str. KW3]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.682 |
96.108 |
0.593 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
59.937 |
94.91 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
55.663 |
92.515 |
0.515 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |