Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   DQL28_RS08065 Genome accession   NZ_LS483334
Coordinates   1586092..1586571 (-) Length   159 a.a.
NCBI ID   WP_231872041.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581092..1591571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS08045 (NCTC12050_01599) - 1581261..1581866 (-) 606 WP_111676738.1 response regulator -
  DQL28_RS08050 (NCTC12050_01600) - 1581847..1583409 (-) 1563 WP_111676740.1 hypothetical protein -
  DQL28_RS08055 (NCTC12050_01601) - 1583449..1585356 (-) 1908 WP_111676742.1 FtsX-like permease family protein -
  DQL28_RS08060 (NCTC12050_01602) - 1585358..1586095 (-) 738 WP_111676744.1 ABC transporter ATP-binding protein -
  DQL28_RS08065 (NCTC12050_01603) comA/nlmT 1586092..1586571 (-) 480 WP_231872041.1 ATP-binding cassette domain-containing protein Regulator
  DQL28_RS08070 (NCTC12050_01604) - 1586627..1588252 (-) 1626 WP_111676748.1 DUF4135 domain-containing protein -
  DQL28_RS08075 (NCTC12050_01605) - 1588334..1588489 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  DQL28_RS08080 (NCTC12050_01606) lacG 1588980..1590386 (-) 1407 WP_063629613.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18480.11 Da        Isoelectric Point: 6.0020

>NTDB_id=1018111 DQL28_RS08065 WP_231872041.1 1586092..1586571(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC12050]
MFDGDVMYNISLGRESVSGEQIIETCKRVSIYDDIMSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1018111 DQL28_RS08065 WP_231872041.1 1586092..1586571(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC12050]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGATTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCATGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.94

93.711

0.384
  rcrQ Streptococcus mutans UA159

38.667

94.34

0.365
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus mitis NCTC 12261

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365