Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL28_RS02635 Genome accession   NZ_LS483334
Coordinates   503601..504266 (+) Length   221 a.a.
NCBI ID   WP_030126859.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498601..509266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS02610 (NCTC12050_00512) - 498753..500153 (+) 1401 WP_111676224.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL28_RS02615 (NCTC12050_00513) - 500153..500530 (+) 378 WP_032464495.1 S1 RNA-binding domain-containing protein -
  DQL28_RS02620 (NCTC12050_00514) cysK 500548..501489 (-) 942 WP_111676226.1 cysteine synthase A -
  DQL28_RS02625 (NCTC12050_00515) - 501617..502249 (-) 633 WP_002983676.1 YigZ family protein -
  DQL28_RS02630 (NCTC12050_00516) comFA/cflA 502304..503629 (+) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  DQL28_RS02635 (NCTC12050_00517) comFC/cflB 503601..504266 (+) 666 WP_030126859.1 ComF family protein Machinery gene
  DQL28_RS02640 (NCTC12050_00518) hpf 504346..504894 (+) 549 WP_111676228.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25231.49 Da        Isoelectric Point: 9.3379

>NTDB_id=1018068 DQL28_RS02635 WP_030126859.1 503601..504266(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC12050]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLPLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1018068 DQL28_RS02635 WP_030126859.1 503601..504266(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC12050]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTCCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412