Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABZS48_RS13565 | Genome accession | NZ_CP160100 |
| Coordinates | 2732374..2732844 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus strain A_01_sau | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2716061..2739402 | 2732374..2732844 | within | 0 |
Gene organization within MGE regions
Location: 2716061..2739402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZS48_RS13440 (ABZS48_13430) | - | 2716061..2717284 (-) | 1224 | WP_000206615.1 | ArgE/DapE family deacylase | - |
| ABZS48_RS13445 (ABZS48_13435) | - | 2717715..2718770 (+) | 1056 | WP_000791399.1 | leukocidin family pore-forming toxin | - |
| ABZS48_RS13450 (ABZS48_13440) | - | 2718792..2719811 (+) | 1020 | WP_000595616.1 | leukocidin/hemolysin toxin family protein | - |
| ABZS48_RS13455 (ABZS48_13445) | sph | 2720068..2720892 (-) | 825 | Protein_2611 | sphingomyelin phosphodiesterase | - |
| ABZS48_RS13460 (ABZS48_13450) | - | 2720949..2721986 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| ABZS48_RS13465 (ABZS48_13455) | - | 2722045..2722509 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| ABZS48_RS13470 (ABZS48_13460) | - | 2722609..2722791 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| ABZS48_RS13475 (ABZS48_13465) | - | 2722995..2723336 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| ABZS48_RS13480 (ABZS48_13470) | - | 2723342..2724274 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| ABZS48_RS13485 (ABZS48_13475) | - | 2724290..2725003 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| ABZS48_RS13490 (ABZS48_13480) | - | 2724966..2725139 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| ABZS48_RS13495 (ABZS48_13485) | - | 2725136..2725381 (+) | 246 | WP_043859301.1 | helix-turn-helix transcriptional regulator | - |
| ABZS48_RS13500 (ABZS48_13490) | - | 2725415..2725630 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| ABZS48_RS13505 (ABZS48_13495) | - | 2725619..2725948 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| ABZS48_RS13510 (ABZS48_13500) | - | 2725999..2726751 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| ABZS48_RS13515 (ABZS48_13505) | - | 2726767..2726964 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| ABZS48_RS13520 (ABZS48_13510) | - | 2726951..2727331 (-) | 381 | WP_000762519.1 | DUF2513 domain-containing protein | - |
| ABZS48_RS13525 (ABZS48_13515) | - | 2727386..2727709 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| ABZS48_RS13530 (ABZS48_13520) | - | 2727706..2727867 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| ABZS48_RS13535 (ABZS48_13525) | - | 2727962..2728264 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| ABZS48_RS13540 (ABZS48_13530) | - | 2728269..2728529 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| ABZS48_RS13545 (ABZS48_13535) | - | 2728538..2728801 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ABZS48_RS13550 (ABZS48_13540) | - | 2728810..2730753 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| ABZS48_RS13555 (ABZS48_13545) | - | 2730755..2731675 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ABZS48_RS13560 (ABZS48_13550) | - | 2731756..2732373 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| ABZS48_RS13565 (ABZS48_13555) | ssbA | 2732374..2732844 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| ABZS48_RS13570 (ABZS48_13560) | - | 2732874..2733767 (+) | 894 | WP_412103809.1 | DnaD domain protein | - |
| ABZS48_RS13575 (ABZS48_13565) | - | 2733774..2733992 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| ABZS48_RS13580 (ABZS48_13570) | - | 2734001..2734405 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ABZS48_RS13585 (ABZS48_13575) | - | 2734418..2734786 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| ABZS48_RS13590 (ABZS48_13580) | - | 2734790..2735032 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| ABZS48_RS13595 (ABZS48_13585) | - | 2735047..2735301 (+) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| ABZS48_RS13600 (ABZS48_13590) | - | 2735288..2735458 (+) | 171 | WP_000714403.1 | hypothetical protein | - |
| ABZS48_RS13605 (ABZS48_13595) | - | 2735451..2735789 (+) | 339 | Protein_2641 | dUTPase | - |
| ABZS48_RS13615 (ABZS48_13605) | - | 2736989..2737213 (+) | 225 | Protein_2643 | dUTPase | - |
| ABZS48_RS13620 (ABZS48_13610) | - | 2737250..2737495 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| ABZS48_RS13625 (ABZS48_13615) | - | 2737492..2737698 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| ABZS48_RS13630 (ABZS48_13620) | - | 2737695..2738081 (+) | 387 | WP_412103810.1 | hypothetical protein | - |
| ABZS48_RS13635 (ABZS48_13625) | rinB | 2738078..2738227 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| ABZS48_RS13640 (ABZS48_13630) | - | 2738227..2738427 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| ABZS48_RS13645 (ABZS48_13635) | - | 2738455..2738871 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| ABZS48_RS13650 (ABZS48_13640) | - | 2739103..2739402 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1018058 ABZS48_RS13565 WP_000610648.1 2732374..2732844(+) (ssbA) [Staphylococcus aureus strain A_01_sau]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1018058 ABZS48_RS13565 WP_000610648.1 2732374..2732844(+) (ssbA) [Staphylococcus aureus strain A_01_sau]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |